View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11333_high_7 (Length: 304)

Name: NF11333_high_7
Description: NF11333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11333_high_7
NF11333_high_7
[»] chr8 (14 HSPs)
chr8 (148-255)||(23702343-23702450)
chr8 (150-247)||(22846658-22846756)
chr8 (149-208)||(41602867-41602926)
chr8 (153-207)||(25896993-25897047)
chr8 (153-197)||(20699460-20699504)
chr8 (149-197)||(20853377-20853425)
chr8 (147-255)||(29044755-29044862)
chr8 (150-197)||(36688264-36688311)
chr8 (147-197)||(39890040-39890090)
chr8 (149-197)||(32071279-32071326)
chr8 (153-201)||(41487472-41487520)
chr8 (149-208)||(28349563-28349622)
chr8 (152-197)||(29657702-29657747)
chr8 (149-197)||(45515932-45515980)
[»] chr7 (28 HSPs)
chr7 (149-255)||(41243643-41243748)
chr7 (149-255)||(15107200-15107304)
chr7 (149-208)||(42256581-42256641)
chr7 (153-253)||(23745897-23745996)
chr7 (152-248)||(47909696-47909792)
chr7 (149-208)||(20184915-20184974)
chr7 (150-197)||(36903534-36903581)
chr7 (140-255)||(14247284-14247399)
chr7 (154-208)||(21505873-21505927)
chr7 (148-197)||(15347952-15348001)
chr7 (151-208)||(36903261-36903318)
chr7 (152-208)||(5172513-5172569)
chr7 (153-197)||(6792063-6792107)
chr7 (143-255)||(36580483-36580595)
chr7 (142-201)||(9477125-9477184)
chr7 (144-203)||(11742704-11742763)
chr7 (153-208)||(20505101-20505156)
chr7 (148-207)||(33159482-33159541)
chr7 (146-180)||(28350112-28350146)
chr7 (217-255)||(44312950-44312988)
chr7 (150-207)||(20505266-20505323)
chr7 (149-197)||(3318317-3318365)
chr7 (153-197)||(4049709-4049753)
chr7 (149-197)||(17931993-17932041)
chr7 (153-197)||(18186719-18186763)
chr7 (153-197)||(18504246-18504289)
chr7 (149-197)||(28786024-28786072)
chr7 (149-197)||(35250118-35250166)
[»] chr1 (17 HSPs)
chr1 (146-255)||(3377497-3377607)
chr1 (147-197)||(51250482-51250532)
chr1 (148-208)||(50226390-50226450)
chr1 (149-204)||(12960845-12960900)
chr1 (150-197)||(14978797-14978844)
chr1 (147-197)||(30849496-30849546)
chr1 (147-197)||(43600402-43600452)
chr1 (147-208)||(17760679-17760740)
chr1 (151-207)||(5287831-5287887)
chr1 (136-208)||(17692713-17692785)
chr1 (149-197)||(25085398-25085446)
chr1 (216-255)||(50401438-50401477)
chr1 (151-197)||(16874770-16874816)
chr1 (140-197)||(7764013-7764070)
chr1 (150-206)||(3377769-3377825)
chr1 (153-197)||(12961111-12961155)
chr1 (152-208)||(18632595-18632651)
[»] chr6 (14 HSPs)
chr6 (151-255)||(6036868-6036971)
chr6 (150-197)||(17248636-17248683)
chr6 (149-208)||(30349612-30349671)
chr6 (149-255)||(10727402-10727509)
chr6 (149-255)||(33399785-33399890)
chr6 (148-208)||(2841069-2841128)
chr6 (153-196)||(239213-239256)
chr6 (154-197)||(20474971-20475014)
chr6 (149-207)||(2203186-2203244)
chr6 (147-193)||(2203421-2203467)
chr6 (148-197)||(30349347-30349396)
chr6 (149-197)||(2853683-2853731)
chr6 (141-197)||(8223997-8224053)
chr6 (153-197)||(26601464-26601508)
[»] chr4 (37 HSPs)
chr4 (141-255)||(14449492-14449608)
chr4 (152-242)||(1420537-1420627)
chr4 (151-207)||(35615315-35615371)
chr4 (141-208)||(51362527-51362594)
chr4 (149-208)||(53312285-53312344)
chr4 (147-197)||(19909170-19909220)
chr4 (149-255)||(44356606-44356711)
chr4 (141-197)||(1571390-1571446)
chr4 (151-203)||(21957728-21957780)
chr4 (153-197)||(42526214-42526258)
chr4 (144-207)||(1186652-1186715)
chr4 (149-208)||(2017044-2017103)
chr4 (154-197)||(14060760-14060803)
chr4 (149-208)||(25909486-25909545)
chr4 (143-197)||(21957532-21957586)
chr4 (148-197)||(2016789-2016838)
chr4 (144-197)||(11824182-11824235)
chr4 (148-197)||(21451457-21451506)
chr4 (152-197)||(21871651-21871696)
chr4 (152-197)||(21927512-21927557)
chr4 (148-197)||(37832964-37833013)
chr4 (152-208)||(14016722-14016778)
chr4 (150-197)||(10059966-10060013)
chr4 (141-180)||(12719730-12719769)
chr4 (150-197)||(52463054-52463101)
chr4 (149-255)||(2836898-2837005)
chr4 (147-197)||(23759558-23759608)
chr4 (148-255)||(23759782-23759889)
chr4 (148-197)||(16292268-16292317)
chr4 (148-197)||(51371462-51371511)
chr4 (149-197)||(4796035-4796083)
chr4 (149-197)||(6207443-6207491)
chr4 (149-197)||(14060970-14061018)
chr4 (150-255)||(20112358-20112463)
chr4 (149-197)||(31553510-31553558)
chr4 (153-197)||(50769366-50769410)
chr4 (149-197)||(54855303-54855351)
[»] chr5 (21 HSPs)
chr5 (150-255)||(32391927-32392033)
chr5 (147-208)||(37897973-37898034)
chr5 (143-255)||(19131708-19131819)
chr5 (150-208)||(25363825-25363882)
chr5 (149-255)||(27904691-27904798)
chr5 (150-255)||(3333909-3334015)
chr5 (148-197)||(36798443-36798492)
chr5 (142-207)||(41138553-41138618)
chr5 (149-208)||(12406040-12406099)
chr5 (146-197)||(24779271-24779322)
chr5 (139-197)||(12406307-12406365)
chr5 (148-197)||(22300599-22300648)
chr5 (143-208)||(36798163-36798228)
chr5 (147-208)||(40276286-40276347)
chr5 (153-197)||(24405493-24405537)
chr5 (151-207)||(43098281-43098337)
chr5 (149-208)||(25910720-25910778)
chr5 (150-197)||(40132904-40132951)
chr5 (153-207)||(8284158-8284212)
chr5 (148-197)||(19340762-19340811)
chr5 (155-207)||(3999351-3999403)
[»] chr3 (27 HSPs)
chr3 (141-197)||(38957836-38957892)
chr3 (150-243)||(54719217-54719309)
chr3 (150-199)||(25248692-25248741)
chr3 (153-197)||(48348525-48348569)
chr3 (153-208)||(25154183-25154238)
chr3 (149-208)||(51315740-51315799)
chr3 (148-197)||(25902620-25902669)
chr3 (148-242)||(28712683-28712777)
chr3 (139-208)||(36677772-36677841)
chr3 (151-208)||(43586815-43586872)
chr3 (153-197)||(7218422-7218466)
chr3 (138-255)||(50802647-50802764)
chr3 (138-255)||(50873113-50873230)
chr3 (149-208)||(25154437-25154496)
chr3 (149-196)||(44433334-44433381)
chr3 (153-208)||(44586042-44586097)
chr3 (149-207)||(14349365-14349423)
chr3 (143-197)||(17773163-17773217)
chr3 (143-197)||(19074464-19074518)
chr3 (151-197)||(54464163-54464209)
chr3 (152-197)||(19404661-19404706)
chr3 (139-208)||(36687851-36687920)
chr3 (153-197)||(86578-86622)
chr3 (140-180)||(12759493-12759533)
chr3 (149-197)||(15978957-15979005)
chr3 (140-208)||(28944221-28944289)
chr3 (161-197)||(29512558-29512594)
[»] chr2 (22 HSPs)
chr2 (141-197)||(6592715-6592771)
chr2 (148-208)||(34679095-34679155)
chr2 (149-197)||(36715561-36715609)
chr2 (147-208)||(43028791-43028852)
chr2 (149-197)||(19399442-19399490)
chr2 (149-208)||(25375129-25375188)
chr2 (149-207)||(5470592-5470650)
chr2 (150-208)||(39918434-39918492)
chr2 (141-255)||(14489205-14489319)
chr2 (138-207)||(19889474-19889543)
chr2 (148-208)||(21358361-21358421)
chr2 (150-197)||(15022838-15022885)
chr2 (147-197)||(14943810-14943860)
chr2 (153-203)||(24306281-24306331)
chr2 (152-197)||(5362446-5362491)
chr2 (150-207)||(24498106-24498162)
chr2 (141-255)||(44617947-44618060)
chr2 (144-208)||(4576537-4576601)
chr2 (145-197)||(19399177-19399229)
chr2 (149-197)||(31827524-31827572)
chr2 (148-196)||(32013326-32013374)
chr2 (150-198)||(37803118-37803166)
[»] scaffold0515 (1 HSPs)
scaffold0515 (136-208)||(3625-3697)
[»] scaffold0306 (1 HSPs)
scaffold0306 (136-208)||(3625-3697)
[»] scaffold0166 (1 HSPs)
scaffold0166 (146-197)||(21654-21705)
[»] scaffold0015 (1 HSPs)
scaffold0015 (149-208)||(77117-77176)
[»] scaffold0137 (1 HSPs)
scaffold0137 (151-197)||(19915-19961)
[»] scaffold0372 (1 HSPs)
scaffold0372 (148-197)||(122-171)
[»] scaffold1458 (1 HSPs)
scaffold1458 (136-208)||(1457-1529)
[»] scaffold0025 (1 HSPs)
scaffold0025 (153-197)||(19608-19652)
[»] scaffold0194 (1 HSPs)
scaffold0194 (149-207)||(25151-25209)
[»] scaffold0062 (2 HSPs)
scaffold0062 (142-208)||(46068-46134)
scaffold0062 (150-208)||(46334-46392)
[»] scaffold0150 (1 HSPs)
scaffold0150 (153-197)||(9803-9847)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 23702450 - 23702343
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgt 247  Q
    |||||||||||||||||||| ||||||||||||   |||||||||||||||||| ||||||        ||||||| ||  |||||||||||||||||||    
T  23702450 aaggcttaatagcagttttagccccctaactttccaaaagttgcgattttagccccctaagaaaaaaattacaaaattgtcccctaagttttgcatttgt 23702351  T
Q  248 gacagttt 255  Q
    ||||||||    
T  23702350 gacagttt 23702343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 22846756 - 22846658
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag-nnnnnnnctacaaaactgctccctaagttttgcatttgt 247  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||        ||||||||||| ||||||||||||||| ||||    
T  22846756 ggcttaatagcagttttaaccccttaacttttttaaagttgtgattttagcctcttaagaaaaaaaactacaaaactgttccctaagttttgcaattgt 22846658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 41602926 - 41602867
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||| |||||||| |||   |||||||||||||||||||||||||    
T  41602926 aggcttaatagcagttttagccccctaagtttcaaaaagttgcgattttagcctcctaag 41602867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 25896993 - 25897047
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||    
T  25896993 ttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaa 25897047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 20699504 - 20699460
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||    
T  20699504 ttaatagcagttttaaccccctaacttttttaaagttgcaatttt 20699460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 20853377 - 20853425
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| |||||||||||| || |||||||||||||    
T  20853377 aggcttaatagcagttttagccccctaactttcttgaagttgcgatttt 20853425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 29044862 - 29044755
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttg 246  Q
    ||||||||||||||||||||| |||||||||||   ||||||| ||||||| | | ||||||       |||||||||||  || |||||||||||||||    
T  29044862 aaaggcttaatagcagttttagccccctaacttccctaaagttacgattttggtc-cctaagaaaaaacctacaaaactgtcccataagttttgcatttg 29044764  T
Q  247 tgacagttt 255  Q
    || ||||||    
T  29044763 tggcagttt 29044755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 36688311 - 36688264
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  36688311 ggcttaatagcagttttaaccccctaactttttcaaagttgtgatttt 36688264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 39890090 - 39890040
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||||| | || |||| |||||||||||||||||||    
T  39890090 aaaggcttaatagcagttttagctccttaacctttttaaagttgcgatttt 39890040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 32071326 - 32071279
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  32071326 aggcttaatagcagttttagcccc-taacttttctaaagttgcgatttt 32071279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 41487520 - 41487472
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattttagcc 201  Q
    ||||||||||||||| ||| |||||||||  ||||||||||||||||||    
T  41487520 ttaatagcagttttagccctctaacttttccaaagttgcgattttagcc 41487472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 28349622 - 28349563
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||| ||||||| ||||||||||||   |||||||||||||| ||| ||||||    
T  28349622 aggcttaatagtagttttagccccctaactttcccaaagttgcgattttggccccctaag 28349563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 29657702 - 29657747
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||| ||||||||| |||||||||| | ||||||||||||||    
T  29657702 cttaataggagttttacctccctaactttatcaaagttgcgatttt 29657747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 45515932 - 45515980
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||| ||||||||| |||| ||| ||||| ||||||||||||||    
T  45515932 aggcttaattgcagttttagccccttaattttttcaaagttgcgatttt 45515980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 41243643 - 41243748
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgtg 248  Q
    ||||||||||||||||||| |||||||||||||  |||||||| ||||||||| ||||||       ||||||||| || ||||||||||||||||||||    
T  41243643 aggcttaatagcagttttagccccctaacttttccaaagttgcaattttagccccctaagaaaaaaactacaaaaccgc-ccctaagttttgcatttgtg 41243741  T
Q  249 acagttt 255  Q
     ||||||    
T  41243742 gcagttt 41243748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 15107304 - 15107200
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgtg 248  Q
    |||||||||||||||||||||||||||| ||||  |||||| ||||||| ||| |||||        ||||||||| |||||||||||||||||||||||    
T  15107304 aggcttaatagcagttttacccccctaatttttccaaagttacgattttggccccctaa--aaaaaactacaaaaccgctccctaagttttgcatttgtg 15107207  T
Q  249 acagttt 255  Q
     ||||||    
T  15107206 gcagttt 15107200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 42256581 - 42256641
Alignment:
Q  149 aggcttaatagcagtttta-cccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||    
T  42256581 aggcttaatagcagttttaacccccctaactttttcaaagttgcgattttagccccctaag 42256641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 23745897 - 23745996
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgtgacag 252  Q
    ||||||||||||||| | ||||||||||||||| ||| ||||||| ||||| ||||       ||||||||| || ||| ||||||||||||||||||||    
T  23745897 ttaatagcagttttaactccctaacttttttaatgttacgattttggcctcttaagaaaaaaactacaaaac-gcccccaaagttttgcatttgtgacag 23745995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 47909696 - 47909792
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgtg 248  Q
    |||||||||||||||| ||||||||||||   |||||||||||||||||| ||||||       ||||||||  || ||||||||||||||| ||||    
T  47909696 cttaatagcagttttagccccctaactttcccaaagttgcgattttagccccctaagaaaaaaactacaaaatcgccccctaagttttgcatctgtg 47909792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 20184915 - 20184974
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||| |||||||| | |||||||||||  |||||||||||||||||| ||||||    
T  20184915 aggcttaataacagttttagctccctaacttttccaaagttgcgattttagccccctaag 20184974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 36903581 - 36903534
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||| |||||||||||||| || |||||||||||    
T  36903581 ggcttaatagcagttttaaccccctaactttttcaatgttgcgatttt 36903534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 14247284 - 14247399
Alignment:
Q  140 ataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagtttt 239  Q
    |||||||||||||||||||||||||||  || |||||||||    |||||| |||||| ||| ||||||       ||||||||| || || ||||||||    
T  14247284 ataaaataaaggcttaatagcagttttcgccacctaactttcacgaagttgtgattttggccgcctaagaaaaaaactacaaaaccgccccataagtttt 14247383  T
Q  240 gcatttgtgacagttt 255  Q
    ||| ||||| ||||||    
T  14247384 gcaattgtggcagttt 14247399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 21505927 - 21505873
Alignment:
Q  154 taatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||  ||||||||||||| |||||||||||||| ||| ||||||    
T  21505927 taatagcagttttagtcccctaactttttcaaagttgcgattttggccccctaag 21505873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 15347952 - 15348001
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||| |||||| ||||||||||||  |||||||||||||||    
T  15347952 aaggcttaatagccgttttagccccctaactttcctaaagttgcgatttt 15348001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 36903261 - 36903318
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||| ||||||| | |||| ||||||  |||||||||||||||||||||||||    
T  36903261 gcttaatagtagttttagctcccttacttttccaaagttgcgattttagcctcctaag 36903318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 5172513 - 5172569
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||| ||||||||  || |||||||||||||||||| |||||| ||||||||||    
T  5172513 cttaataacagttttagtcctctaacttttttaaagttgtgattttggcctcctaag 5172569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 6792107 - 6792063
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||    
T  6792107 ttaatagcagttttagccccctaacttttccaaagttgcgatttt 6792063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 36580595 - 36580483
Alignment:
Q  143 aaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt-agcctcctaagnnnnnnnctacaaaactgctccctaagttttgc 241  Q
    ||||||||| ||||||| ||||||| |||  ||||||||| |||||||||||||| | ||| | |||       ||||||||| || |||||||||||||    
T  36580595 aaataaaggtttaatagtagttttaaccctttaactttttcaaagttgcgattttgatccttc-aagaaaaaagctacaaaaccgccccctaagttttgc 36580497  T
Q  242 atttgtgacagttt 255  Q
    ||||||| ||||||    
T  36580496 atttgtggcagttt 36580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 9477125 - 9477184
Alignment:
Q  142 aaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcc 201  Q
    |||||||||| ||||||||||||||  |||||||  ||||  ||||||||||||||||||    
T  9477125 aaaataaaggtttaatagcagttttggccccctatgttttaaaaagttgcgattttagcc 9477184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 11742704 - 11742763
Alignment:
Q  144 aataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctc 203  Q
    ||||||| |||||| ||| ||||  ||||||| |||||| ||||||||||||||||||||    
T  11742704 aataaagacttaattgcacttttggccccctatctttttaaaagttgcgattttagcctc 11742763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 20505101 - 20505156
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||| |||||||||||| | |||||||||| ||| ||| ||||||    
T  20505101 ttaatagcagttttagccccctaactttctcaaagttgcgactttggccccctaag 20505156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 33159482 - 33159541
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||||||||| ||| ||||| ||||||| |||||| |||||||||||||| ||| |||||    
T  33159482 aaggcttaattgcacttttaaccccctatctttttaaaagttgcgattttggccccctaa 33159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 28350112 - 28350146
Alignment:
Q  146 taaaggcttaatagcagttttacccccctaacttt 180  Q
    |||||||||||||||||||||| ||||||||||||    
T  28350112 taaaggcttaatagcagttttagccccctaacttt 28350146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 44312988 - 44312950
Alignment:
Q  217 tacaaaactgctccctaagttttgcatttgtgacagttt 255  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  44312988 tacaaaactgcctcctaagttttgcatttgtgacagttt 44312950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 20505323 - 20505266
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||||||||||||||||  ||||||| ||||| | ||||||||||||| ||| |||||    
T  20505323 ggcttaatagcagttttcaccccctagcttttatgaagttgcgattttggccccctaa 20505266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 3318317 - 3318365
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||| ||||||| |||| ||||||||  ||||||||||||||    
T  3318317 aggcttaataggagttttagccccttaacttttccaaagttgcgatttt 3318365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 4049709 - 4049753
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||| |||||||||| ||| ||||||||| |||||||||||||||    
T  4049709 ttaacagcagttttagcccactaacttttctaaagttgcgatttt 4049753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 17932041 - 17931993
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| || ||| ||||||  ||||||||||||||    
T  17932041 aggcttaatagcagttttagcctcctcacttttccaaagttgcgatttt 17931993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 18186763 - 18186719
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||| |||||||||||||  |||||| |||||||    
T  18186763 ttaatagcagttttagccccctaacttttccaaagttacgatttt 18186719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 18504246 - 18504289
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||    
T  18504246 ttaatagcagttttaacccc-taacttttttaaagttgtgatttt 18504289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 28786072 - 28786024
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| |||| ||||||||  ||||||| ||||||    
T  28786072 aggcttaatagcagttttaaccccataacttttccaaagttgtgatttt 28786024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 35250118 - 35250166
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||| ||||||| ||| |||||||||  ||||||||||||||    
T  35250118 aggcttaatagtagttttagccctctaacttttccaaagttgcgatttt 35250166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 3377497 - 3377607
Alignment:
Q  146 taaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag-nnnnnnnctacaaaactgctccctaagttttgcatt 244  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||| ||| ||||||        ||||||||| || ||||||||||||||||    
T  3377497 taaaggcttaatagcagttttagccccctaacttttccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatt 3377596  T
Q  245 tgtgacagttt 255  Q
    |||| ||||||    
T  3377597 tgtggcagttt 3377607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 51250482 - 51250532
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  51250482 aaaggcttaataacagttttagccccctaactttttcaaagttgcgatttt 51250532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 50226390 - 50226450
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||||| ||| ||||||    
T  50226390 aaggcttaattacagttttagccccctaactttttcaaagttgcgattttggccccctaag 50226450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 12960845 - 12960900
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcc 204  Q
    |||||||||| |||||||| ||| |||||||||| |||||||||||||| ||||||    
T  12960845 aggcttaataacagttttagcccgctaactttttcaaagttgcgattttggcctcc 12960900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 14978797 - 14978844
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||    
T  14978797 ggcttaatagcagttttagccccctaacttttccaaagttgcgatttt 14978844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 30849546 - 30849496
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||||||  | ||||| ||||||||||||||||||||    
T  30849546 aaaggcttaatagcagttttagtctcctaatttttttaaagttgcgatttt 30849496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 43600452 - 43600402
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||||| | |||||||| |||||| |||||||||||    
T  43600452 aaaggcttaatagcagttttagcaccctaactattttaaggttgcgatttt 43600402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 17760679 - 17760740
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||||||||| |||| |||||||||||  | |||||||||||||| ||| ||||||    
T  17760679 aaaggcttaatagcagctttagccccctaacttcctcaaagttgcgattttggccccctaag 17760740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 5287887 - 5287831
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    ||||||||||||||||| |||| ||||||| | |||||||||||||| ||| |||||    
T  5287887 gcttaatagcagttttaaccccttaactttctcaaagttgcgattttggccccctaa 5287831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 17692713 - 17692785
Alignment:
Q  136 aaatataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||  | ||| ||||||||| ||||| |||||||||||| | ||||||| |||||||||| ||||||    
T  17692713 aaatataaataataggtttaatagcaattttaaccccctaactttctcaaagttgtgattttagccccctaag 17692785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 25085398 - 25085446
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||  ||||||||||||  |||||||||||||||    
T  25085398 aggcttaatagcagttttcgccccctaactttcataaagttgcgatttt 25085446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 50401438 - 50401477
Alignment:
Q  216 ctacaaaactgctccctaagttttgcatttgtgacagttt 255  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  50401438 ctacaaaaccgccccctaagttttgcatttgtgacagttt 50401477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 16874816 - 16874770
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||| |||||||||||| | |||||||| |||||    
T  16874816 gcttaatagcagttttaaccccctaactttctcaaagttgcaatttt 16874770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 7764013 - 7764070
Alignment:
Q  140 ataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||| ||| ||||  ||| ||| |||||| ||||||||||||||    
T  7764013 ataaaataaaggcttaatggcactttttgccctctatctttttaaaagttgcgatttt 7764070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 3377825 - 3377769
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctccta 206  Q
    |||||||||||||||||| ||||||||||||   ||||||| |||||| ||| ||||    
T  3377825 ggcttaatagcagttttagccccctaactttcccaaagttgtgattttggcccccta 3377769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 12961155 - 12961111
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||| || ||||| ||||| ||||||||||||||    
T  12961155 ttaatagcagttttagcctcctaattttttcaaagttgcgatttt 12961111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 18632651 - 18632595
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||||||||  |||||||||||||   ||||||||||||| ||||| ||||    
T  18632651 cttaatagcagttttcgccccctaacttttacgaagttgcgattttggcctcttaag 18632595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 6036971 - 6036868
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgtgac 250  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||| ||||||||||       |||||||||||  ||||||||||||||| |||| |    
T  6036971 gcttaatagcagttttagcccc-taacttttctaaagttgcgattttggcctcctaagaagaaaactacaaaactgtcccctaagttttgcatatgtggc 6036873  T
Q  251 agttt 255  Q
    |||||    
T  6036872 agttt 6036868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 17248636 - 17248683
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  17248636 ggcttaatagcagttttagcctcctaacttttttaaagttgcgatttt 17248683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 30349671 - 30349612
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||   ||||||||||||| |||||||||||||| ||| ||||||    
T  30349671 aggcttaatagcagtttttgtcccctaactttttcaaagttgcgattttggccccctaag 30349612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 10727509 - 10727402
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag-nnnnnnnctacaaaactgctccctaagttttgcatttgt 247  Q
    |||| |||||||||||||| |||||||||||||  ||||||| |||||| ||| ||||||        ||||||||| || ||||||||||||||| |||    
T  10727509 aggcataatagcagttttagccccctaacttttccaaagttgtgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatctgt 10727410  T
Q  248 gacagttt 255  Q
    | ||||||    
T  10727409 ggcagttt 10727402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 33399785 - 33399890
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgtg 248  Q
    |||||||||||||||||||  ||||||||||||  |||||||||||||| |||  |||||       ||||||||| |  ||||||||||| ||||||||    
T  33399785 aggcttaatagcagtttta-gcccctaacttttccaaagttgcgattttggccctctaagaaaaaaactacaaaaccggaccctaagttttacatttgtg 33399883  T
Q  249 acagttt 255  Q
     ||||||    
T  33399884 gcagttt 33399890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 2841128 - 2841069
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||||  ||||||||||||| ||| ||||| ||||| |||||||||    
T  2841128 aaggcttaatagcagttttagacccctaactttttcaaaattgcgctttta-cctcctaag 2841069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 239256 - 239213
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattt 196  Q
    ||||||||||||||| |||||||||||| | |||||||||||||    
T  239256 ttaatagcagttttaaccccctaactttctcaaagttgcgattt 239213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 20475014 - 20474971
Alignment:
Q  154 taatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||    
T  20475014 taatagcaattttagccccctaactttttcaaagttgcgatttt 20474971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 2203186 - 2203244
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    ||||||||||||| ||||| | ||||||||||   |||||||||||||| |||||||||    
T  2203186 aggcttaatagcaattttagctccctaactttcccaaagttgcgattttggcctcctaa 2203244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 2203467 - 2203421
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcga 193  Q
    ||||||||||||||||||||| | || ||||||||| ||||||||||    
T  2203467 aaaggcttaatagcagttttaactccttaactttttcaaagttgcga 2203421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 30349347 - 30349396
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||||| ||| ||||||||   ||||||||||||||    
T  30349347 aaggcttaatagcagttttagccctctaactttcccaaagttgcgatttt 30349396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 2853731 - 2853683
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| || ||||||||| | |||||||| |||||    
T  2853731 aggcttaatagcagttttaacctcctaactttctcaaagttgcaatttt 2853683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 8224053 - 8223997
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||| ||||||||||||||||||||  ||   |||||||| |||||||||||||||    
T  8224053 taaaaaaaaggcttaatagcagttttgacctattaacttttctaaagttgcgatttt 8223997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 26601464 - 26601508
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||| |||||||| | || ||||||||||||||||||||||||    
T  26601464 ttaataacagttttatctccttaacttttttaaagttgcgatttt 26601508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 14449608 - 14449492
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag--nnnnnnnctacaaaactgctccctaagttt 238  Q
    ||||| || |||||||||| ||||||| |||||||||||||  |||||||||||||| ||||| ||||         ||||||||| |||||||||||||    
T  14449608 taaaaaaatggcttaatagtagttttagccccctaacttttccaaagttgcgattttggcctcttaaggaaaaaaaactacaaaaccgctccctaagttt 14449509  T
Q  239 tgcatttgtgacagttt 255  Q
    |||||||||| ||||||    
T  14449508 tgcatttgtggcagttt 14449492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 1420537 - 1420627
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgca 242  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| |||||||||        ||||||||| || ||||||||||||||    
T  1420537 cttaatagcagttttagccccctaacttttccaaagttgcgattttggcctcctaaaaaaaaaactacaaaaccgccccctaagttttgca 1420627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 35615315 - 35615371
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||    
T  35615315 gcttaatagcagttttagccccctaacttttctaaagttgcgattttggccccctaa 35615371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 51362527 - 51362594
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||| |||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| ||| ||||||    
T  51362527 taaattaaaggtttaatagtagttttagccccctaacttttctaaagttgcgattttggccccctaag 51362594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 53312285 - 53312344
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| ||||||    
T  53312285 aggcttaatagcatttttagccccctaactttttcaaagttgcgattttggccccctaag 53312344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 19909170 - 19909220
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  19909170 aaaggcttaatagcagttttaaccccctaactttctcaaagttgcgatttt 19909220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 44356711 - 44356606
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgtg 248  Q
    ||||||||||||||||||| |||| ||||||| | |||||||||||||| ||| ||||||        |||||||| || ||||||||||||||| ||||    
T  44356711 aggcttaatagcagttttagcccc-taactttctcaaagttgcgattttggccgcctaagaaaaaaattacaaaaccgccccctaagttttgcatatgtg 44356613  T
Q  249 acagttt 255  Q
     ||||||    
T  44356612 gcagttt 44356606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 1571390 - 1571446
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||||||||||| | ||||||||||   ||||||||||||||    
T  1571390 taaaataaaggcttaatagcagttttaacaccctaactttacaaaagttgcgatttt 1571446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 21957780 - 21957728
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctc 203  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  21957780 gcttaatagcagttttagccccctaacttttccaaagttgcgattttggcctc 21957728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 42526258 - 42526214
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||    
T  42526258 ttaatagcagttttaaccccctaactttcttaaagttgcgatttt 42526214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 1186652 - 1186715
Alignment:
Q  144 aataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||||||||||||| ||| ||||  |||||||||||||| |||||||||||||| ||| |||||    
T  1186652 aataaaggcttaattgcacttttggccccctaactttttaaaagttgcgattttggccccctaa 1186715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 2017103 - 2017044
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||| |||| |||||||  ||||||||||||||| ||||| ||||    
T  2017103 aggcttaatagcagttttagccccataactttcctaaagttgcgattttggcctcataag 2017044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 14060760 - 14060803
Alignment:
Q  154 taatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  14060760 taatagcagttttaaccccctaactttttcaaagttgcgatttt 14060803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 25909486 - 25909545
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||| |||||||||||||  ||||||| |||||| ||| ||||||    
T  25909486 aggcttaatagcagttttaaccccctaacttttccaaagttgtgattttggccccctaag 25909545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 21957532 - 21957586
Alignment:
Q  143 aaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||| |||||||| | |||||||||| | ||||||||||||||    
T  21957532 aaataaaggcttaatatcagttttagctccctaactttctcaaagttgcgatttt 21957586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 2016789 - 2016838
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||| |||||||||||| |||||||||||||  ||||||||||||||    
T  2016789 aaggcttgatagcagttttagccccctaacttttccaaagttgcgatttt 2016838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 11824182 - 11824235
Alignment:
Q  144 aataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||| ||||||||||||||||||| ||||||||||||  |||||||| ||||||    
T  11824182 aatataggcttaatagcagttttaaccccctaactttcctaaagttgtgatttt 11824235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 21451457 - 21451506
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||||| || ||||||||| | ||||||||||||||    
T  21451457 aaggcttaatagcagttttagcctcctaactttctcaaagttgcgatttt 21451506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 21871696 - 21871651
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||    
T  21871696 cttaatagcaattttagccccctaactttttcaaagttgcgatttt 21871651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 21927557 - 21927512
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||    
T  21927557 cttaatagcaattttagccccctaactttttcaaagttgcgatttt 21927512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 37833013 - 37832964
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||||| || |||||||||  |||||||||||||||    
T  37833013 aaggcttaatagcagttttagcctcctaactttcctaaagttgcgatttt 37832964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 14016722 - 14016778
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||| |||||| ||||||||||||   |||||||||||||| ||||||||||    
T  14016722 cttaatagcggttttagccccctaactttcccaaagttgcgattttggcctcctaag 14016778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 10060013 - 10059966
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||  ||||||| ||||| ||||||||||||||    
T  10060013 ggcttaatagcagttttagacccctaattttttcaaagttgcgatttt 10059966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 12719769 - 12719730
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttt 180  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  12719769 taaaaaaaaggcttaatagcagttttaaccccctaacttt 12719730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 52463101 - 52463054
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  52463101 ggcttaataacagttttagccccctaattttttcaaagttgcgatttt 52463054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 2836898 - 2837005
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag-nnnnnnnctacaaaactgctccctaagttttgcatttgt 247  Q
    |||||||||| |||||||| |||||||||||||  |||| ||||||||| ||| || |||        ||||||||| || ||||||||||||||| |||    
T  2836898 aggcttaataacagttttaaccccctaacttttccaaagctgcgattttggcccccaaagaaaaaaaactacaaaaccgccccctaagttttgcatgtgt 2836997  T
Q  248 gacagttt 255  Q
    || |||||    
T  2836998 gagagttt 2837005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 23759558 - 23759608
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||| ||||||  ||||||||||||  |||||||||||||||    
T  23759558 aaaggcttaatagtagttttcgccccctaactttcataaagttgcgatttt 23759608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 23759889 - 23759782
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgt 247  Q
    ||||||||||| || ||||| |||| |||||||  ||||||||||||||| | | ||||||       ||||||||| |  |||||||||||| || |||    
T  23759889 aaggcttaataacaattttaaccccttaactttcataaagttgcgattttggtcccctaagaaaaaaactacaaaaccgtcccctaagttttgtatctgt 23759790  T
Q  248 gacagttt 255  Q
    ||||||||    
T  23759789 gacagttt 23759782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 16292268 - 16292317
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||| ||||||| | ||||| |||||||| ||||||||||||||||||||    
T  16292268 aaggtttaatagtaattttaaccccctaatttttttaaagttgcgatttt 16292317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 51371462 - 51371511
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||||| |||| ||||||| || |||||| ||||||    
T  51371462 aaggcttaatagcagttttaaccccttaactttcttgaagttgtgatttt 51371511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 4796035 - 4796083
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||| |||||  ||||||||||||| ||| ||||||||||    
T  4796035 aggcttaatagcatttttagtcccctaactttttcaaaattgcgatttt 4796083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 6207491 - 6207443
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| |||||||| |||  |||||||| ||||||    
T  6207491 aggcttaatagcagttttagccccctaattttcctaaagttgtgatttt 6207443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 14061018 - 14060970
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||| |||| | |||||| ||||| ||||||||||||||    
T  14061018 aggcttaatagcagctttaactccctaattttttcaaagttgcgatttt 14060970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 20112463 - 20112358
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcatttgtga 249  Q
    ||||||||| |||||||| ||  |||||||||  |||||||||||||| ||| || |||       ||||||||| || ||| ||||||||||| ||||     
T  20112463 ggcttaataacagttttagccttctaacttttccaaagttgcgattttggcccccaaagaaaaatactacaaaaccgcccccaaagttttgcatatgtgg 20112364  T
Q  250 cagttt 255  Q
    ||||||    
T  20112363 cagttt 20112358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 31553558 - 31553510
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||| |  ||| | ||||||||||||||||||||||    
T  31553558 aggcttaatagcagtttgaggcccatcacttttttaaagttgcgatttt 31553510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 50769366 - 50769410
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||    
T  50769366 ttaatagcagttttatccccctaactttcccaaagttgcgatttt 50769410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 54855303 - 54855351
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| || ||||||||| | |||| |||||||||    
T  54855303 aggcttaatagcagttttaaccacctaactttctcaaagctgcgatttt 54855351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 32392033 - 32391927
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag-nnnnnnnctacaaaactgctccctaagttttgcatttgtg 248  Q
    ||||||||||| |||||| | |||||||||||| |||||||||||||||||| ||||||        ||||||||| || || |||||||||||| ||||    
T  32392033 ggcttaatagctgttttaactccctaactttttcaaagttgcgattttagccccctaagaaaaaaaactacaaaaccgccccttaagttttgcatgtgtg 32391934  T
Q  249 acagttt 255  Q
    |||||||    
T  32391933 acagttt 32391927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 37898034 - 37897973
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||||||| ||| ||||||    
T  37898034 aaagccttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaag 37897973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 19131819 - 19131708
Alignment:
Q  143 aaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgca 242  Q
    |||| |||| |||||||||||||||  || ||||||||| ||||||||||||||| ||| |||||        ||||||||| || ||||||||||||||    
T  19131819 aaattaaggtttaatagcagttttagtcctctaacttttctaaagttgcgatttttgccccctaa-aaaaaaactacaaaaccgccccctaagttttgca 19131721  T
Q  243 tttgtgacagttt 255  Q
    | |||||||||||    
T  19131720 tctgtgacagttt 19131708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 25363825 - 25363882
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||    
T  25363825 ggcttaatagcagttttagcccc-taacttttttaaagttgtgattttggcctcctaag 25363882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 27904798 - 27904691
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag-nnnnnnnctacaaaactgctccctaagttttgcatttgt 247  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||||| ||| | ||||        ||||||||| || |||||||||||||| ||||    
T  27904798 aggcttaatagcagttttagccctctaactttttcaaagttgcgattttggccccgtaagaaaaaaaactacaaaaccgccccctaagttttgcacttgt 27904699  T
Q  248 gacagttt 255  Q
    | ||||||    
T  27904698 ggcagttt 27904691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 3334015 - 3333909
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag-nnnnnnnctacaaaactgctccctaagttttgcatttgtg 248  Q
    |||||||||| ||||||| |||||||||||||  |||||||||||||| ||| ||||||        ||||||||| ||||| |||||||||||| ||||    
T  3334015 ggcttaatagtagttttagccccctaacttttccaaagttgcgattttggccccctaagaagaaaaactacaaaaccgctccataagttttgcatatgtg 3333916  T
Q  249 acagttt 255  Q
     ||||||    
T  3333915 gcagttt 3333909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 36798492 - 36798443
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  36798492 aaggcttaatagcagttttagccccctaactttctcaaagttgcgatttt 36798443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 41138553 - 41138618
Alignment:
Q  142 aaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||||||||||||||| ||| ||||| ||||||| |||| | |||||||||||||||||| |||||    
T  41138553 aaaataaaggcttaattgcacttttagccccctatctttctaaaagttgcgattttagccccctaa 41138618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 12406040 - 12406099
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||| ||||||||||||   |||||||||||||| ||| ||||||    
T  12406040 aggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 12406099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 24779271 - 24779322
Alignment:
Q  146 taaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||| ||||||||| ||||||| || ||||||||||||||||||||||||||    
T  24779271 taaaagcttaatagtagttttagcctcctaacttttttaaagttgcgatttt 24779322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 12406365 - 12406307
Alignment:
Q  139 tataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||| || |||||||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  12406365 tataatattaaggcttaatagcaattttagccccctaactttttcaaagttgagatttt 12406307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 22300599 - 22300648
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||| ||||||| ||| ||||||||| |||||||||||||||    
T  22300599 aaggcttaatagtagttttagccctctaacttttctaaagttgcgatttt 22300648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 36798163 - 36798228
Alignment:
Q  143 aaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||||||||||||||||||  ||| ||||||||  |||||||| ||||| ||| ||||||    
T  36798163 aaataaaggcttaatagcagttttagacccttaacttttccaaagttgcaattttggccccctaag 36798228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 40276347 - 40276286
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||||| ||||||||||||   ||| ||||||||||| || ||||||    
T  40276347 aaaggcttaatagcagttttatccccctaactttcccaaatttgcgattttaaccccctaag 40276286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 24405493 - 24405537
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||    
T  24405493 ttaatagcagttttagtcccctaactttttcaaagttgcgatttt 24405537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 43098337 - 43098281
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||||| ||| |||||    
T  43098337 gcttaatagcagttttagtcccctaactttttcaaagttacgatttttgccccctaa 43098281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 25910720 - 25910778
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||| |||||||||||| |||||||| ||||||||| |||||| ||| ||||||    
T  25910720 aggcttaataacagttttacccc-ctaactttcttaaagttgtgattttggccccctaag 25910778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 40132904 - 40132951
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||  || |||||||||| ||||||||||||||    
T  40132904 ggcttaatagcagttttagtcctctaactttttcaaagttgcgatttt 40132951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 8284158 - 8284212
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    ||||||||| ||||| |||| ||||||||  |||||||||||||| |||||||||    
T  8284158 ttaatagcaattttaaccccataacttttccaaagttgcgattttggcctcctaa 8284212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 19340762 - 19340811
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||| ||||||||||||||| |||||||||||||  ||| ||||||||||    
T  19340762 aaggtttaatagcagttttagccccctaacttttccaaaattgcgatttt 19340811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 3999403 - 3999351
Alignment:
Q  155 aatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||||||| |||| |||| ||||||||| ||||||| || |||||||||||||    
T  3999403 aatagcaggtttagccccataactttttcaaagttgtgactttagcctcctaa 3999351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 38957836 - 38957892
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  38957836 taaaaaaaaggcttaatagcagttttagcctcctaatttttttaaagttgcgatttt 38957892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 54719309 - 54719217
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgcat 243  Q
    |||||||| ||||||||| ||||||||||| || |||||||||||||| ||||||||||       ||||||||| || |||||||||||||||    
T  54719309 ggcttaatggcagttttaaccccctaacttattcaaagttgcgattttggcctcctaag-aaaaaactacaaaaccgccccctaagttttgcat 54719217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 25248692 - 25248741
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttag 199  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  25248692 ggcttaatagcagttttaaccctttaacttttttaaagttgcgattttag 25248741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 48348569 - 48348525
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||    
T  48348569 ttaatagtagttttatccccctaacttttttaaagttgcgatttt 48348525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 25154183 - 25154238
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||| || ||||||||||||||| |||| ||||||||| ||||||    
T  25154183 ttaatagcagttttaacctcctaacttttttaaaattgcaattttagccccctaag 25154238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 51315799 - 51315740
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||| ||||||||||||   |||||||||||||| ||| ||||||    
T  51315799 aggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 51315740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 25902669 - 25902620
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||| |||||||| |||||||||||| | ||||||||||||||    
T  25902669 aaggcttaatatcagttttagccccctaactttctcaaagttgcgatttt 25902620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 28712777 - 28712683
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttgca 242  Q
    |||||||||||||||||||  ||||||||||||| | |||||| |||||| ||| ||||||       ||||||||  || ||||||||||||||    
T  28712777 aaggcttaatagcagttttcgccccctaacttttatgaagttgtgattttggccccctaagaaaaaaactacaaaatcgccccctaagttttgca 28712683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 36677841 - 36677772
Alignment:
Q  139 tataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||| ||| ||||||||||||||||||||  || ||||  |||||||||||||||| | ||||||    
T  36677841 tataaaatataggtttaatagcagttttaccccctaaatttttccaaagttgcgattttagtcccctaag 36677772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 43586872 - 43586815
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||| ||||||| || || |||||||| |||||||||||||| ||||||||||    
T  43586872 gcttaatagtagttttagcctcccaactttttcaaagttgcgattttggcctcctaag 43586815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 7218466 - 7218422
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  7218466 ttaatagcaattttagccccctaatttttttaaagttgcgatttt 7218422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 50802647 - 50802764
Alignment:
Q  138 atataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagtt 237  Q
    ||||| |||| | ||||||||||||||||| || | ||||||||  ||||||| |||||| ||| ||||||       |||||||||| | |||||||||    
T  50802647 atatataatataagcttaatagcagttttaacctcttaacttttccaaagttgtgattttggccccctaagaaaaaaactacaaaactaccccctaagtt 50802746  T
Q  238 ttgcatttgtgacagttt 255  Q
    |||||  |||| ||||||    
T  50802747 ttgcacatgtggcagttt 50802764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 50873230 - 50873113
Alignment:
Q  138 atataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagtt 237  Q
    ||||| |||| | ||||||||||||||||| || | ||||||||  ||||||| |||||| ||| ||||||       |||||||||| | |||||||||    
T  50873230 atatataatataagcttaatagcagttttaacctcttaacttttccaaagttgtgattttggccccctaagaaaaaaactacaaaactaccccctaagtt 50873131  T
Q  238 ttgcatttgtgacagttt 255  Q
    |||||  |||| ||||||    
T  50873130 ttgcacatgtggcagttt 50873113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 25154496 - 25154437
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||| ||||||||||||   ||||||| ||||||  |||||||||    
T  25154496 aggcttaatagcagttttaaccccctaactttaccaaagttgtgattttgacctcctaag 25154437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 44433381 - 44433334
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattt 196  Q
    ||||||||||||||||||| |||||||||||||  | |||||||||||    
T  44433381 aggcttaatagcagttttagccccctaacttttccacagttgcgattt 44433334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 44586097 - 44586042
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||| ||||||||||||   |||||||||||||| ||| ||||||    
T  44586097 ttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 44586042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 14349423 - 14349365
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    ||||||||||||||||||  |||||||||||||   |||||||||||||| || |||||    
T  14349423 aggcttaatagcagttttcgccccctaacttttacgaagttgcgattttaaccccctaa 14349365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 17773163 - 17773217
Alignment:
Q  143 aaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||||||||  ||||||||||||    |||||||||||||    
T  17773163 aaataaaggcttaatagcagttttcgccccctaactttcactaagttgcgatttt 17773217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 19074464 - 19074518
Alignment:
Q  143 aaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||||||||  ||||||||||||    |||||||||||||    
T  19074464 aaataaaggcttaatagcagttttcgccccctaactttcactaagttgcgatttt 19074518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 54464163 - 54464209
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||  |||||||||||| ||||||| |||||||    
T  54464163 gcttaatagcagttttagtcccctaacttttctaaagttacgatttt 54464209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 19404706 - 19404661
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||| |||||||||| || |||||||||| |||||||||||||||    
T  19404706 cttaacagcagttttaacctcctaacttttctaaagttgcgatttt 19404661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 36687920 - 36687851
Alignment:
Q  139 tataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||| ||| ||||||||||||||| |||  ||| ||||  |||||||||||||||| | ||||||    
T  36687920 tataaaatataggtttaatagcagttttagcccattaatttttccaaagttgcgattttagtcccctaag 36687851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 86578 - 86622
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||| ||||| |||||||||||||| |||||||| |||||    
T  86578 ttaatagcaattttagccccctaactttttaaaagttgctatttt 86622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 12759493 - 12759533
Alignment:
Q  140 ataaaataaaggcttaatagcagttttacccccctaacttt 180  Q
    ||||||||||||||||||| |||||||  ||||||||||||    
T  12759493 ataaaataaaggcttaataacagtttttgccccctaacttt 12759533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 15979005 - 15978957
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||| ||||||| |||| |||||||| |||| ||||||||||    
T  15979005 aggcttaatagtagttttagccccgtaacttttctaaaattgcgatttt 15978957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 28944289 - 28944221
Alignment:
Q  140 ataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||  ||||||||||||||||||   ||||||||||||   ||||||||||||| ||||| ||||    
T  28944289 ataaaatttaggcttaatagcagtttttgtcccctaacttttactaagttgcgattttggcctcataag 28944221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 29512558 - 29512594
Alignment:
Q  161 agttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  29512558 agttttagccccctaactttttcaaagttgcgatttt 29512594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 6592715 - 6592771
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||| ||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  6592715 taaaatataggcttaatagcagttttagccccctaacttttccaaagttgcgatttt 6592771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 34679095 - 34679155
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||| ||| ||||||    
T  34679095 aaggcttaatagcagttttagccccctaacttttccaaagttgcgattttggccacctaag 34679155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 36715609 - 36715561
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  36715609 aggcttaatagcagttttagctccctaacttttttaaagttgcgatttt 36715561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 43028791 - 43028852
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||||| ||||||||||| |  |||||||||||||| ||| ||||||    
T  43028791 aaaggcttaatagcagttttagccccctaacttctccaaagttgcgattttggccccctaag 43028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 19399490 - 19399442
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  19399490 aggcttaatagcagttttagccccctaactttttcaaagttgtgatttt 19399442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 25375188 - 25375129
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||||||||| |||||||| ||||| || ||||||||||| ||| ||||||    
T  25375188 aggcttaatagcagttttagccccctaattttttcaatgttgcgattttggccccctaag 25375129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 5470650 - 5470592
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||||| |||||||||||| ||||||||||||  ||||||||||||||| ||| |||||    
T  5470650 aggctttatagcagttttagccccctaactttcctaaagttgcgattttggccccctaa 5470592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 39918434 - 39918492
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||| ||||||| |||||||||||| | |||||||||||||| ||| ||||||    
T  39918434 ggcttaatagtagttttagccccctaactttctcaaagttgcgattttggccccctaag 39918492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 14489205 - 14489319
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttg 240  Q
    ||||||||||||||||||||||||||| ||| ||||||||   ||||||| |||||| ||| | ||||        |||||||| || ||||||||||||    
T  14489205 taaaataaaggcttaatagcagttttagccctctaactttccaaaagttgtgattttggccccttaagaaaaaaattacaaaaccgccccctaagttttg 14489304  T
Q  241 catttgtgacagttt 255  Q
    ||  |||| ||||||    
T  14489305 cacctgtggcagttt 14489319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 19889543 - 19889474
Alignment:
Q  138 atataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||||||||||||||||||| ||| ||||  |||| || |||||  |||||||||||||| |||||||||    
T  19889543 atataaaataaaggcttaattgcacttttggccccatatcttttcaaaagttgcgattttggcctcctaa 19889474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 21358421 - 21358361
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||||||||||||  |||||||||||| | ||||||| |||||| ||| ||||||    
T  21358421 aaggcttaatagcagtttttgccccctaactttctcaaagttgtgattttggccccctaag 21358361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 15022838 - 15022885
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||| |||||||||||||  ||||||| ||||||    
T  15022838 ggcttaatagcagttttagccccctaacttttcgaaagttgtgatttt 15022885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 14943860 - 14943810
Alignment:
Q  147 aaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||||| |||| ||||||||  ||||||| ||||||    
T  14943860 aaaggcttaatagcagttttagccccttaacttttccaaagttgtgatttt 14943810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 24306331 - 24306281
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgattttagcctc 203  Q
    |||||||||  |||| |||||||| ||||| ||||||||||||||||||||    
T  24306331 ttaatagcatatttaaccccctaattttttcaaagttgcgattttagcctc 24306281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 5362491 - 5362446
Alignment:
Q  152 cttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||  |||||||||||| |||||||| ||||||    
T  5362491 cttaatagcagttttaatcccctaacttttctaaagttgtgatttt 5362446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 24498106 - 24498162
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    ||||||||||||||||||  ||||||| ||||| ||||||| |||||||||| |||||    
T  24498106 ggcttaatagcagtttta-gcccctaattttttcaaagttgtgattttagccccctaa 24498162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 44618060 - 44617947
Alignment:
Q  141 taaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaagnnnnnnnctacaaaactgctccctaagttttg 240  Q
    |||||| |||||||||||||||||||| ||| ||||||||    ||||||||||||| | | | ||||        |||||||| || ||||||||||||    
T  44618060 taaaatcaaggcttaatagcagttttaaccctctaactttcaagaagttgcgattttggtcccttaagaaaaaat-tacaaaaccgccccctaagttttg 44617962  T
Q  241 catttgtgacagttt 255  Q
    |||||||| ||||||    
T  44617961 catttgtggcagttt 44617947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 4576537 - 4576601
Alignment:
Q  144 aataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||| | ||||||||||||||| || ||||||||||| |||||||  ||||| ||| ||||||    
T  4576537 aataaatgtttaatagcagttttagcctcctaactttttcaaagttgtcattttggccccctaag 4576601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 19399177 - 19399229
Alignment:
Q  145 ataaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||| ||||||||||| ||||| || ||||||||| | ||||||||||||||    
T  19399177 ataaatgcttaatagcaattttagcctcctaactttctcaaagttgcgatttt 19399229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 31827524 - 31827572
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||||| | |||||||||||  ||||||| ||||||    
T  31827524 aggcttaatagcagttttaactccctaacttttccaaagttgtgatttt 31827572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 32013374 - 32013326
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgattt 196  Q
    ||||||||||| |||||||| | |||||||||||| ||||||| |||||    
T  32013374 aaggcttaataacagttttaactccctaactttttaaaagttgtgattt 32013326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 37803118 - 37803166
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgatttta 198  Q
    ||||||||||||||||||  | ||||||||| | |||||||||||||||    
T  37803118 ggcttaatagcagttttagtctcctaactttctcaaagttgcgatttta 37803166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 3625 - 3697
Alignment:
Q  136 aaatataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||| |||| | ||||||||||||||||||| ||||||||||||   |||||||||||||| ||| ||||||    
T  3625 aaataaaaaaaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 3697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 3625 - 3697
Alignment:
Q  136 aaatataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||| |||| | ||||||||||||||||||| ||||||||||||   |||||||||||||| ||| ||||||    
T  3625 aaataaaaaaaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 3697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 21654 - 21705
Alignment:
Q  146 taaaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||| ||||||||| ||||||| || ||||||||||||||||||||||||||    
T  21654 taaaagcttaatagtagttttagcctcctaacttttttaaagttgcgatttt 21705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 77176 - 77117
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||| ||||||| || ||||||||||||||||||||| |||| ||| ||||||    
T  77176 aggcttaatagtagttttaaccgcctaacttttttaaagttgcggttttggccccctaag 77117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 19915 - 19961
Alignment:
Q  151 gcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  19915 gcttaatagcagttttaaccccctaaattttttaaagttgtgatttt 19961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 122 - 171
Alignment:
Q  148 aaggcttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||||||| || ||||||||| | ||||||||||||||    
T  122 aaggcttaatagcagttttagcctcctaactttctcaaagttgcgatttt 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 1457 - 1529
Alignment:
Q  136 aaatataaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||| |||| | ||||||||||||||||||| ||||||||||||   ||||||| |||||| ||| ||||||    
T  1457 aaataaaaaaaataggcttaatagcagttttagccccctaactttcacaaagttgagattttggccccctaag 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 19652 - 19608
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||    
T  19652 ttaatagcagttttagtcccctaactttttcaaagttgcgatttt 19608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 25209 - 25151
Alignment:
Q  149 aggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaa 207  Q
    |||| |||||||||||||| ||  ||||||||| |||||||| |||||||||| |||||    
T  25209 aggcataatagcagttttagccttctaacttttctaaagttgtgattttagccccctaa 25151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 46068 - 46134
Alignment:
Q  142 aaaataaaggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    ||||||||||||| |||||||||||  ||||||||||||    |||||||||||||| || ||||||    
T  46068 aaaataaaggctttatagcagttttcgccccctaactttcacgaagttgcgattttaaccccctaag 46134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 46392 - 46334
Alignment:
Q  150 ggcttaatagcagttttacccccctaacttttttaaagttgcgattttagcctcctaag 208  Q
    |||||||||||||||||| | || |||||||| ||||||| | ||||| ||||||||||    
T  46392 ggcttaatagcagttttaactccttaacttttctaaagtttcaattttggcctcctaag 46334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 9847 - 9803
Alignment:
Q  153 ttaatagcagttttacccccctaacttttttaaagttgcgatttt 197  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||||    
T  9847 ttaatagcagttttaaccccctaatatttttaaagttgtgatttt 9803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University