View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11333_low_1 (Length: 590)
Name: NF11333_low_1
Description: NF11333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11333_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 9412217 - 9411719
Alignment:
| Q |
19 |
gttgaggccaaagaaagatcacaaaatcagattctactggaacctttaccattggggtgtcggatacgcaactatcatcatcagcatcatcaacatcttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9412217 |
gttgaggccaaagaaagatcacaaaatcagattctactggaacctttaccattggggtgtcggatacgcaactatcatcatcagcatcatcaacatcttt |
9412118 |
T |
|
| Q |
119 |
aaaggatttgaagcattggaggtgtctgcagcagatcgctacgataactggaagcatgcatacaccggcattattgcagcattgggtggtgttgctgtac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9412117 |
aaaggatttgaagcattggaggtgtctgcagcagatcgctacgataactggaagcatgcatacaccggcattatcgcagcattgggtggtgttgctgtac |
9412018 |
T |
|
| Q |
219 |
ttttggaagcttacacatggatcattgtgatcaagaggaagaaatcagagaacaagttgcaaggaatgaatggaacaaatggtaatggatatggttctag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9412017 |
ttttggaagcttacacatggatcattgtgatcaagaggaagaaatcagagaacaagttgcaaggaatgaatggaacaaatggtaatggatatggttctag |
9411918 |
T |
|
| Q |
319 |
ggtgtaggatactgagatagatatagatactggattttggcttatgagttttatgagttttggtgttagaccctttttgtatattttgttgcatgagtgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9411917 |
ggtgtaggatactgagatagatatagatactggattttggcttatgagttttatgagttttggtgttagaccctttttgtatattttgttgcatgagtgt |
9411818 |
T |
|
| Q |
419 |
ttgtagtaatactcttggattctgatttttagattattctttcatagcatagtgaaatcgtggagtatggttttcgccatgctattattccaatggatac |
518 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9411817 |
ttgtagt-atactcttggattctgatttttagattattctttcatagcatagtgaaatcgtggagtatggttttcgccatgctattattccaatggatac |
9411719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 1029903 - 1029979
Alignment:
| Q |
164 |
aactggaagcatgcatacaccggcattattgcagcattgggtggtgttgctgtacttttggaagcttacacatggat |
240 |
Q |
| |
|
|||||||||||||| |||| || ||||||| || ||||| || ||||||| ||||||||||||||||| ||||| |
|
|
| T |
1029903 |
aactggaagcatgcttacattggtattattggtgctttggggggcattgctgtccttttggaagcttacacgtggat |
1029979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 55895023 - 55894913
Alignment:
| Q |
164 |
aactggaagcatgcatacaccggcattattgcagcattgggtggtgttgctgtacttttggaagcttacacatggatcattgtgatcaagaggaagaaat |
263 |
Q |
| |
|
|||||||||||||| |||| || ||||||| || ||||| || ||||||| ||||||||||||||||| ||||| | || |||||||||||| |
|
|
| T |
55895023 |
aactggaagcatgcttacattggtattattggtgctttggggggcattgctgtccttttggaagcttacacgtggatggtatgcatgaagaggaagaaag |
55894924 |
T |
|
| Q |
264 |
cagagaacaag |
274 |
Q |
| |
|
||||||||||| |
|
|
| T |
55894923 |
cagagaacaag |
55894913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University