View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11334_low_2 (Length: 425)

Name: NF11334_low_2
Description: NF11334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11334_low_2
NF11334_low_2
[»] chr1 (5 HSPs)
chr1 (1-425)||(33160296-33160725)
chr1 (332-425)||(29658843-29658936)
chr1 (203-327)||(29659189-29659323)
chr1 (273-327)||(29719216-29719270)
chr1 (332-425)||(29718870-29718963)
[»] chr7 (3 HSPs)
chr7 (180-283)||(15092404-15092503)
chr7 (179-246)||(10170311-10170378)
chr7 (179-246)||(10177836-10177903)
[»] chr6 (8 HSPs)
chr6 (180-246)||(6426279-6426345)
chr6 (179-278)||(7442584-7442677)
chr6 (180-283)||(6394611-6394710)
chr6 (190-238)||(6589617-6589665)
chr6 (186-246)||(6597184-6597244)
chr6 (183-238)||(14820443-14820498)
chr6 (183-238)||(14818165-14818220)
chr6 (196-246)||(6594884-6594934)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 33160296 - 33160725
Alignment:
Q  1 cttggtaacttctataaatttcatttctgcacaaaagagtgttaaaggcgaactaaacagttgagaattgttttatgaatcagttctaacaataagatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  33160296 cttggtaacttctataaatttcatttctgcacaaaagagtgttaaaggcgaactaaacagttaagaattgttttatgtatcagttctaacaataagatta 33160395  T
Q  101 gcagtcatttcaagaacagatgccaagttacgtacacttaaaaagaaaaagcagtaacttccagatgagtaaatgcacttgacattttaaaaaagtaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||    
T  33160396 gcagtcatttcaagaacagatgccaagttacgtacacttaaaaagaaaaagcggtagcttccggatgagtaaatgcacttgacattttaaaaaagtaatt 33160495  T
Q  201 tctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatactagcaaacaaaacatccatgacg- 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  33160496 tctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagcactttcataatactagcaaacaaaacatccatgacga 33160595  T
Q  300 ----atgcaagaagactttcttctttctgtcagtataagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgt 395  Q
        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160596 tgcaatgcaagaagactttcttctttctgtcactataagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgt 33160695  T
Q  396 ccttcgaatagctcaaatcaagcacctcca 425  Q
    ||||||||||||||||||||||||||||||    
T  33160696 ccttcgaatagctcaaatcaagcacctcca 33160725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 332 - 425
Target Start/End: Complemental strand, 29658936 - 29658843
Alignment:
Q  332 aagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcacctcca 425  Q
    |||||||||| ||||||||||||||||||| ||||||| |||  |||| |||||| ||||| ||||||| ||||||||||||||||||| ||||    
T  29658936 aagttcaaatgcttaatcttactacaacattttaaaacttgagaaatagtttcttcagatacgtccttccaatagctcaaatcaagcacttcca 29658843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 29659323 - 29659189
Alignment:
Q  203 tcagagaagtaaatcttaaagcaaaaacaa-cttacaaagttcaatgaaacttgagcatag----tactttcataatacta-----gcaaacaaaacatc 292  Q
    ||||||| |||||||||||| |||||| || ||||||||||||||| ||||||||||||||    || ||| | |||||||     |||||||| |||||    
T  29659323 tcagagaggtaaatcttaaaacaaaaaaaaacttacaaagttcaatcaaacttgagcatagcagttagtttgagaatactatactagcaaacaagacatc 29659224  T
Q  293 catgacgatgcaagaagactttcttctttctgtca 327  Q
     |||||| ||||||||||||||| |||||||||||    
T  29659223 aatgacgttgcaagaagactttcctctttctgtca 29659189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 29719270 - 29719216
Alignment:
Q  273 atactagcaaacaaaacatccatgacgatgcaagaagactttcttctttctgtca 327  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  29719270 atactagcaaacaagacatccatgacgttgcaagaagactttcctctttctgtca 29719216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 425
Target Start/End: Complemental strand, 29718963 - 29718870
Alignment:
Q  332 aagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcacctcca 425  Q
    |||||||||| |||||||||| |||||||||||||||| | |  || | |||||| ||| |  |||||| ||||||||||||||||||||||||    
T  29718963 aagttcaaatgcttaatcttagtacaacatcttaaaactttagaaacagtttcttcagacacttccttccaatagctcaaatcaagcacctcca 29718870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 15092503 - 15092404
Alignment:
Q  180 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatactag 279  Q
    |||||||||||||| | ||||||||||||||||||||||| || |||||| ||||||||  ||||    |||||| ||||||| | ||||| ||||||||    
T  15092503 tgacattttaaaaaggaaatttctcagagaagtaaatcttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatactag 15092408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 10170378 - 10170311
Alignment:
Q  179 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 246  Q
    |||||||||||||| | |||||||||| |||| ||||||||||| ||||||| ||||||| |||||||    
T  10170378 ttgacattttaaaatattaatttctcaaagaactaaatcttaaaacaaaaaccacttacagagttcaa 10170311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 10177903 - 10177836
Alignment:
Q  179 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 246  Q
    |||||||||||||| | |||||||||| |||| ||||||||||| ||||||| ||||||| |||||||    
T  10177903 ttgacattttaaaatattaatttctcaaagaactaaatcttaaaacaaaaaccacttacagagttcaa 10177836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 6426279 - 6426345
Alignment:
Q  180 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 246  Q
    |||||||||||||| |  |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  6426279 tgacattttaaaaaggctatttctcagagaagtaaatcataaaacaaaaacaacttacaatgttcaa 6426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 7442677 - 7442584
Alignment:
Q  179 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatacta 278  Q
    ||||||||| |||||| |||||||||| |||| ||||||||||| ||||||||||||  |||||| |||    ||| ||||| |||||||||||||||||    
T  7442677 ttgacatttaaaaaaactaatttctcaaagaaataaatcttaaaacaaaaacaactt--aaagtttaat----ctttagcatggtactttcataatacta 7442584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 6394611 - 6394710
Alignment:
Q  180 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatactag 279  Q
    |||||||||||||| | |||||||||||||||||||| || || |||||| ||||||||  ||||    |||||| ||||||| | ||||| ||||||||    
T  6394611 tgacattttaaaaaggaaatttctcagagaagtaaatgttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatactag 6394706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 6589665 - 6589617
Alignment:
Q  190 aaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 238  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  6589665 aaaaagtaatttctcagagaagtgaatattaaaacaaaaacaacttaca 6589617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 6597244 - 6597184
Alignment:
Q  186 tttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 246  Q
    ||||||||| |||||||||||| |||||||| ||||| ||||||||||| ||| |||||||    
T  6597244 tttaaaaaactaatttctcagaaaagtaaattttaaaacaaaaacaactgacagagttcaa 6597184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 14820443 - 14820498
Alignment:
Q  183 cattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 238  Q
    ||||||||||| | || |||||||||| |||||||||||| |||||||||||||||    
T  14820443 cattttaaaaaggcaaattctcagagatgtaaatcttaaaacaaaaacaacttaca 14820498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 14818165 - 14818220
Alignment:
Q  183 cattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 238  Q
    ||||||||||| | || |||||| ||| |||||||||||| |||||||||||||||    
T  14818165 cattttaaaaaggcaaattctcaaagatgtaaatcttaaaacaaaaacaacttaca 14818220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 6594934 - 6594884
Alignment:
Q  196 taatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 246  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||||||| |||||    
T  6594934 taatttcgcagagaattaaatcttaaaacaaaagcaacttacaaaattcaa 6594884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University