View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11334_low_3 (Length: 424)
Name: NF11334_low_3
Description: NF11334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11334_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 363096 - 362685
Alignment:
| Q |
1 |
ctaaagtggctggaatgttgagaaaatgtatgattagtttatatgttatgattttaaatctttatgattacaaatattagtagattcctatctatagagg |
100 |
Q |
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| T |
363096 |
ctaaagtggctggaatgttgagaaaaggtatgattagtttatatgttatgattttaaatctttatgattacaaatattagtagattcctatctatagagg |
362997 |
T |
|
| Q |
101 |
cgcgtggnnnnnnntatcaatatgcttcatcaattgattattattgaaataagttatgttttcctattaatttcataacgtatgatattataacnnnnnn |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
362996 |
cgcgtggaaaaaaatatcaatatgcttcatcaattgattattattgaaataagttatgttttcctattaatttcataatgtatgatattataactttttt |
362897 |
T |
|
| Q |
201 |
nnnnnngctttgtgaacagtgttggttccaaagagcatgattccacgtaagagatatctagttggtggttggtgcaagttcatttaggagaggaatgtca |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
362896 |
ttttt-gctttgtgaacagtgtaggttccaaagagcatgattccacataagagatatctagttggtggttggtgcaagtttatttaggagaggaatgtca |
362798 |
T |
|
| Q |
301 |
aaattggtgataggttgtttttcaccattgaaagtactccatcaatatctatgttcagtttattttagacagtaatagtgattaggtttgttgtggtgtg |
400 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
362797 |
aaattggtgataggttgtttttcatcattgaaagtactccatcaatatctatgttcagtttattttatacagtaatagtgattaggtttgttgtggtgtg |
362698 |
T |
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| Q |
401 |
tgtgtttgatgtc |
413 |
Q |
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| T |
362697 |
tgtgtttgatgtc |
362685 |
T |
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Back To:
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Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 218 - 384
Target Start/End: Original strand, 41024141 - 41024307
Alignment:
| Q |
218 |
agtgttggttccaaagagcatgattccacgtaagagatatctagttggtggttggtgcaagttcatttaggagaggaatgtcaaaattggtgataggttg |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
41024141 |
agtgttggttccaaagagcatgattccacataagagatatctagttagtggttggtgcaagttcattcaggacaggaatgccaaaattggtgataggttg |
41024240 |
T |
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| Q |
318 |
tttttcaccattgaaagtactccatcaatatctatgttcagtttattttagacagtaatagtgatta |
384 |
Q |
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|||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||||| |
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| T |
41024241 |
tttttcaccattgaaagtactccaacaatatttatgttcggtttattttagacagtgatagtgatta |
41024307 |
T |
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