View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11334_low_5 (Length: 253)
Name: NF11334_low_5
Description: NF11334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11334_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 16087279 - 16087434
Alignment:
| Q |
19 |
gcctataaaccagcaaagctttaaaaagcaaacatgtttaacatattagtcaggcgctcggttcaaagaactttacacgttacattataatatgattata |
118 |
Q |
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| T |
16087279 |
gcctataaaccagcaaagctttaaaaagcaaacatgtttaacatattagtcaggcgctcggttcaaagaactttac----cacattataatatgattata |
16087374 |
T |
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| Q |
119 |
cgttccaacataatgactcaagattttagaaagtcaaaatcgcacactctcatactctaa |
178 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087375 |
tgttccaacatagtgactcaagattttagaaagtcaaaatcgcacactctcatactctaa |
16087434 |
T |
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