View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11335_low_1 (Length: 1298)
Name: NF11335_low_1
Description: NF11335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11335_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 229 - 947
Target Start/End: Complemental strand, 17725935 - 17725214
Alignment:
| Q |
229 |
aatattttataatcatttagttatgagcaatgaattacaaactcagacacaaacatcggacatggtactggtactaaacaatttaaaataaaatgacatg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725935 |
aatattttataatcatttagttatgagcaatgaattacaaactcagacacaaacatcggacatggtactggtactaaacaatttaaaataaaatgacatg |
17725836 |
T |
|
| Q |
329 |
attagacgtaatcatgcataggtgtcgtgtttacatatccggcaccaagacatgtcatatccgacaccaataataatttaattttttgaagtgattgaat |
428 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725835 |
attagacgtaatcatgcacaggtgtcgtgtttacatatccgacaccaagacatgtcatatccgacaccaataataatttaattttttgaagtgattgaat |
17725736 |
T |
|
| Q |
429 |
caaatcatgtgtattagtattgaacgatatgtgtcagatatcaaacacgccgtcaatttaaagtatgagtaccataaaggaagtaaacaatataaaatta |
528 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725735 |
caaatcatgtgtagtagtattgaacgatatgtgtcagatatcaaacacgccgtcaatttaaagtatgagtaccataaaggaagtaaacaatataaaatta |
17725636 |
T |
|
| Q |
529 |
atttcaaacttatagtgtgtatagaatagaacattgatttgttattatgccttaatattgaacaggtattggaggctttctatacccattggagaagata |
628 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725635 |
atgtcaaacttatagtgtgtatagaatagaacattgatttgttattatgccttaatattgaacaggtattggaggctttctatacccattggagaagata |
17725536 |
T |
|
| Q |
629 |
ctgatcacccacttgtgaatccatttggaccaagaagtaagagtcttgaggaaattgatcttgacccaattcttgtggtggttggagaaaatgatttgct |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725535 |
ctgatcacccacttgtgaatccatttggaccaagaagtaagagtcttgaggaaattgatcttgacccaattcttgtggtggttggagaaaatgatttgct |
17725436 |
T |
|
| Q |
729 |
taaagataggacagatgattatgtaagaaggcttaagaattggggtaaaaatatagagtatgtagaatttgaaggacaacagcatgggttcttcactctt |
828 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17725435 |
taaagataggacagaggattatgcaagaaggcttaagaattggggtaaaaatatagagtatgtagaatttgaaggacaacagcatgggttcttcactatt |
17725336 |
T |
|
| Q |
829 |
gatccaaattcagaaccatcaaaagaattgatgttgttcatcaagcaattcattgaaaaatattgaggg---aatgtttgaatgcttcaaacattttaat |
925 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
17725335 |
gatccaaattcagaaccatcaaaagaattgatgttggtcatcaagcaattcattgagaaatattaagggaataatgtttgaatgcttcaaacattttaat |
17725236 |
T |
|
| Q |
926 |
tgcagtagcttttaaggtatct |
947 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17725235 |
tgcagtagcttttaaggtatct |
17725214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 17726180 - 17725961
Alignment:
| Q |
18 |
gtaatatagctcataatttggcggttcggcttgggtttggttcggttgagttggcaccggttagggttaggggttatgttttgttggctccgttttttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
17726180 |
gtaatatagctcataatttggcggttcggcttgggtttggttcggttgagttggcaccggttcgggttaggggttatgttttgttggcaccgtttattgg |
17726081 |
T |
|
| Q |
118 |
tggaaccgtgaggaccaagtcagaagctgaaggaccggttgatgcttttctcaacttggaatatattgacaggttctgtaatttgatttcctatcttcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17726080 |
tggaaccgtgaggaccaagtcagaagctgaaggaccggttgatgcttttctcaacttggaatatattgacaggttctgtaatttgatttcctatcttcac |
17725981 |
T |
|
| Q |
218 |
tttgcataccaaatatttta |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17725980 |
tttgcataccaaatatttta |
17725961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University