View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11335_low_2 (Length: 604)
Name: NF11335_low_2
Description: NF11335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11335_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 4486484 - 4485907
Alignment:
| Q |
1 |
aagcttatgggtcctatatgtcatgtctggtgctacttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagac |
100 |
Q |
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| T |
4486484 |
aagcttatgggtcctatatgtcatgtctggtgctacttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagac |
4486385 |
T |
|
| Q |
101 |
ttgccaccagaagaagataatggcacgccaagtgatgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataatt |
200 |
Q |
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| T |
4486384 |
ttgccaccagaagaaggtaatggcacgccaagtgatgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataatt |
4486285 |
T |
|
| Q |
201 |
caagcaaggaacaagatgtaatcgactgttcttcgagatcaggtcatgcgagcatcgctgatacccctgagcattcacaggaactcgcttctataccaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
4486284 |
caagcaaggaacaagatgtaatcgactgttcttcgagatcaggtcatgcgagcatcgctgatactcctgagcattcagaggaactcgcttctataccaaa |
4486185 |
T |
|
| Q |
301 |
agacgtacatattacaccatataacataggaactttagaaccacatacacttcaaaataattgtcatatcagacactgtacaaaccaactttaattagtt |
400 |
Q |
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| T |
4486184 |
agacgtacatattacaccatataacataggaactttagaaccacatacacttcaaaataattgtcatatcagacactgtacaaaccaactttaattagtt |
4486085 |
T |
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| Q |
401 |
actgtggagattcaattgtgtaagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttcc |
500 |
Q |
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| T |
4486084 |
actgtggagattcaattgtgtaagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttcc |
4485985 |
T |
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| Q |
501 |
gtttcttctctttgcacattggcatttggaaaataatctgcattatattttataattcatcacaagtctctcatttcc |
578 |
Q |
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| T |
4485984 |
gtttcttctctttgcacattggcatttggaaaataatctgcattatattctataattcatcacaagtctctcatttcc |
4485907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 4480362 - 4479992
Alignment:
| Q |
1 |
aagcttatgggtcctatatgtcatgtctggtgctacttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagac |
100 |
Q |
| |
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||||||||||| |||||||| || |||| | |||||||| ||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||| |
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| T |
4480362 |
aagcttatgggctctatatgttatctctgccaccacttctaccatttgtgtgctaatatcaaccatcacgtgcctaaaatccaatcagccagatgaagac |
4480263 |
T |
|
| Q |
101 |
ttgccaccagaagaagataatggcacgccaagtgatgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataatt |
200 |
Q |
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| T |
4480262 |
ttgccaccagaaggc---aatgtcacacaaactgatgaaagtgtgtggaaaaaggttattacatttgcaaagcagatttatagcaaaatgcgtaataatt |
4480166 |
T |
|
| Q |
201 |
caagcaaggaacaagatgtaatcgactgttcttcgagatcaggtcatgcgagcatcgctgatacccctgagcattcacaggaactcgcttctataccaaa |
300 |
Q |
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||||||||| || ||||||| ||||||||||||||||||||||||||||| | || |||||||| ||||| || ||||||| ||||||| ||||| |
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| T |
4480165 |
caagcaaggcacgggatgtaactgactgttcttcgagatcaggtcatgcgagtaaagccgatacccccgagcaatcgcaggaacccgcttctccgccaaa |
4480066 |
T |
|
| Q |
301 |
agacgtacatattacaccatataacataggaactttagaaccacatacacttcaaaataattgtcatatcagac |
374 |
Q |
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||| ||||||| |||| || || |||||||||| | ||||| || | |||||||||| ||||| |||||||||| |
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| T |
4480065 |
agaagtacatactacaacacatgacataggaacataagaactacgtgcacttcaaaacaattggcatatcagac |
4479992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 513
Target Start/End: Complemental strand, 4479905 - 4479797
Alignment:
| Q |
406 |
ggagattcaattgtgt-aagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttccgttt |
504 |
Q |
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||||||||||||| || ||||| ||||||||| ||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||| || |
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| T |
4479905 |
ggagattcaattgggttaagtactgaaaaatagtagattcgttcatatgattcaataaaaatgttctttccttttgtttgtacctatcaattatccaatt |
4479806 |
T |
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| Q |
505 |
cttctcttt |
513 |
Q |
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|| |||||| |
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| T |
4479805 |
ctcctcttt |
4479797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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