View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11335_low_4 (Length: 254)
Name: NF11335_low_4
Description: NF11335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11335_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 21975615 - 21975382
Alignment:
| Q |
5 |
ggagaagcaaaggcaacatattcccaaggtatcttgataatattcttattagtattcataatgataataatgataagttagttgagttttaattt-tatt |
103 |
Q |
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| T |
21975615 |
ggagcagcaaaggcaacatatttccaaggtatcttgattatgttattattagtattcataatattcataatgatga------tgagttttaatttgtatt |
21975522 |
T |
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| Q |
104 |
tt-cttttcctgaataaagcttgggagacaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaaccctaaattat |
202 |
Q |
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| T |
21975521 |
tttctattcatgaataaagcttgggatgcaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaacccaaaattat |
21975422 |
T |
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| Q |
203 |
ggtgtaagcatgccttctcctactatcccaagtgtgatgt |
242 |
Q |
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| T |
21975421 |
ggtgtaagcatgccttctcctattatcccaagtgtgatgt |
21975382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 44478563 - 44478796
Alignment:
| Q |
5 |
ggagaagcaaaggcaacatattcccaaggtatcttgataatattcttattagtattcataatgataataatgataagttagttgagttttaattt-tatt |
103 |
Q |
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| T |
44478563 |
ggagcagcaaaggcaacatatttccaaggtatcttgattattttattattggtattcataatattcataatgatga------tgagttttaatttgtatt |
44478656 |
T |
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| Q |
104 |
tt-cttttcctgaataaagcttgggagacaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaaccctaaattat |
202 |
Q |
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| T |
44478657 |
tttctattcatgaataaagcttgggatgcaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaacccaaaattat |
44478756 |
T |
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| Q |
203 |
ggtgtaagcatgccttctcctactatcccaagtgtgatgt |
242 |
Q |
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| T |
44478757 |
ggtgtaagcatgccttctcctattatcccaagtgtgatgt |
44478796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 41770989 - 41770940
Alignment:
| Q |
193 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
242 |
Q |
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| T |
41770989 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
41770940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 47735733 - 47735782
Alignment:
| Q |
193 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
242 |
Q |
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| T |
47735733 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
47735782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 13649461 - 13649412
Alignment:
| Q |
193 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
242 |
Q |
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| T |
13649461 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
13649412 |
T |
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