View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11336_high_1 (Length: 533)
Name: NF11336_high_1
Description: NF11336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11336_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 26 - 436
Target Start/End: Original strand, 812771 - 813182
Alignment:
| Q |
26 |
atttattacaaaatcaaaatagttctttgactgcgcaagagggagaagattgaagaaggtaatggaaatcaaattcattttacttacaacatgacatgaa |
125 |
Q |
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| T |
812771 |
atttattacaaaatcaaaatagttctttgactgcgcaagagggagaagat-gaagaaggtaatggaaatcaaattcattttacttacaacatgacatgaa |
812869 |
T |
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| Q |
126 |
aaacacaaaaatgaaattgtaagtttgaaacccacaaatcattcatnnnnnnntcaaataaattgagatttgacaagatcaaaacacaacccaattaaac |
225 |
Q |
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| T |
812870 |
aaacacaaaaatcaaattgtaagtttgaaacccacaaatcattgataaaaaaatcaaataaattgagatttgacaagatgaaaacacaacccaattaaac |
812969 |
T |
|
| Q |
226 |
atgttgaagatatgaaaaagaaatgaagttaaccctatgctactcctc--ttgcataacataacatgattataaatttgtgccatnnnnnnntcaaactt |
323 |
Q |
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| T |
812970 |
atgttgaagatatgaaaaagaaatgaagctaaccctgttctactactccattgcgtcacataacatgattataaatttgtgtcataaaaaaatcaaactt |
813069 |
T |
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| Q |
324 |
tttctttgacaaactacatataaaccttcaaattcagaataaatatttcttcgtcctgcatgtgtaaactgttcccattcatcatgttacaaaatgaaga |
423 |
Q |
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| T |
813070 |
tttctttgacaaactacatataaaccttcaaattcagaataaatatttcttggtcctggatgtgtaaactgttcccattcatcatgttacaaaatgaaga |
813169 |
T |
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| Q |
424 |
aggtaatcgaaat |
436 |
Q |
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| T |
813170 |
aggtaatcgaaat |
813182 |
T |
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