View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11336_high_2 (Length: 488)
Name: NF11336_high_2
Description: NF11336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11336_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 35 - 374
Target Start/End: Original strand, 53679266 - 53679605
Alignment:
| Q |
35 |
ccaaactgttattaaactaaactggtttataaatgttcagactgaaccatatgaaaaggtctggttactaactgaactgttttaacaagaagtgaaattg |
134 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53679266 |
ccaaactgttattgaactaaactggtttataaatgttcagactgaaccatatgaaaaggtctggttactaactgaactgttttaacaagaactgaaattg |
53679365 |
T |
|
| Q |
135 |
aaccagaatataactagcttaaaaacagaactgaaacatgacatatttaaaacgttaaacgtggtgaacaaaattgaaactttttaccaatctttcaatc |
234 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53679366 |
aaccagaatataactagcttaaaaacaaaactgaaacataacatatttaaaacgttaaacatggtgaacaaaattgaaattttttaccaatctttcaatc |
53679465 |
T |
|
| Q |
235 |
aaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaatcaa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53679466 |
aaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaatcaa |
53679565 |
T |
|
| Q |
335 |
acgaaagtaagaaaggtgattcaatgttgattaagcaggt |
374 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53679566 |
acgaaagtaagaaaggtgattcggtgttgattaagcaggt |
53679605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 2045066 - 2045022
Alignment:
| Q |
75 |
actgaaccatatgaaaaggtctggttactaactgaactgttttaa |
119 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
2045066 |
actgaaccatatgaaaaggattggttattagctgaactgttttaa |
2045022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University