View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11336_high_4 (Length: 327)
Name: NF11336_high_4
Description: NF11336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11336_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 42639168 - 42639429
Alignment:
| Q |
21 |
ttattcgtccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccag |
120 |
Q |
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| T |
42639168 |
ttattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccag |
42639267 |
T |
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| Q |
121 |
ctggtccatagttgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagta |
220 |
Q |
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| T |
42639268 |
ctggtccatagttgtagttccaagatagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagta |
42639367 |
T |
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| Q |
221 |
gtcctttgatggaccatcaatctcttcagtatagcaaaaatctgcacaacattaatatcaca |
282 |
Q |
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| T |
42639368 |
gtcctttgatggaccatcaatctcttcagtatagcaaaaatctgcacaacattaatatcaca |
42639429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 42634093 - 42634336
Alignment:
| Q |
23 |
attcgtccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagct |
122 |
Q |
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| T |
42634093 |
attcatccaataccataatgctgtcttgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagct |
42634192 |
T |
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| Q |
123 |
ggtccatagttgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagtagt |
222 |
Q |
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| T |
42634193 |
ggtccgtaattaaagttccaagataattgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgttgctttcatcgcagtagt |
42634292 |
T |
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| Q |
223 |
cctttgatggaccatcaatctcttcagtatagcaaaaatctgca |
266 |
Q |
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| T |
42634293 |
cctttgatgcaccatccttctcttctatatagcaaaaatctgca |
42634336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 42628651 - 42628785
Alignment:
| Q |
149 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagtagtcctttgatggaccatcaatctcttca |
248 |
Q |
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| T |
42628651 |
ttgaatcggtccacaaccatagaaccctttgttaggggcacatgtgtactctgcattgctttcatcacagtagtcttatgatgcaccatcaatctcttca |
42628750 |
T |
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| Q |
249 |
gtatagcaaaaatctgca-caacattaatatcaca |
282 |
Q |
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| T |
42628751 |
gtatagcagaaatctgcatcaacattaatttcaca |
42628785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
62 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
112 |
Q |
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| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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