View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11336_low_1 (Length: 632)
Name: NF11336_low_1
Description: NF11336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11336_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Original strand, 26840066 - 26840504
Alignment:
| Q |
9 |
agcagagaggacctattagtactaacacatacttctttagacact--gtacatatatcatgagatccactatgacactatacttgcatcaataaacaaaa |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
26840066 |
agcaaagaggacctattagtactaacacatacttctttagacactctgtacatatatcatgagatccactgtgacactatacttgcaccaataaacaaaa |
26840165 |
T |
|
| Q |
107 |
atgatactgtaattctttagacactttgtagacactatactttgcagaggttgaaaaagagaagagcaacaccgaaaaaatcagaagtgaatagtaacaa |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26840166 |
atgatattgtaattctttagacactttgtagacactatactttgcagaggttgaaaaagagaagagcagcaccgaaaaaatcagaagtgaatagtaacaa |
26840265 |
T |
|
| Q |
207 |
atgctcctcaattcaaacccattcacacaaacttcatgcaagtggccattttgtcttcaaaagctttgaattcttagcccagcactacacttacaaacag |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
26840266 |
atgctcctcaattcaaacccattcacaaaaacttcatgcaagtggccattttgtcttcaaaagctttgaattcttagcccagaactacactgacaaacag |
26840365 |
T |
|
| Q |
307 |
ttcctctagtttgaaatatggagttttctagccctgcactacaaagaaaaatggttctaaagataaggctaattggaaacataaaattcacattacagtt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26840366 |
ttcctctagtttgaaatatggagttttctagccctgcactacaaagaaaaatggttcgaaagataaggctaattggaagcataaaattcacattacagtt |
26840465 |
T |
|
| Q |
407 |
gcacaatctttagagtaaaagagtggacattcatttcaa |
445 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26840466 |
gcacaatctttagtgtaaaagagtggacattcatttcaa |
26840504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 50975160 - 50975266
Alignment:
| Q |
9 |
agcagagaggacctattagtactaacacatacttctttagacactgt--acatatatcatgagatccactatgacactatacttgcatcaataaacaaaa |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50975160 |
agcaaagaggacctattagtactaacacatacttctttagacactctgcacatatatcatgagatccactatgacactatacttgcaccaataaacaaaa |
50975259 |
T |
|
| Q |
107 |
atgatac |
113 |
Q |
| |
|
||||||| |
|
|
| T |
50975260 |
atgatac |
50975266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University