View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11336_low_2 (Length: 306)
Name: NF11336_low_2
Description: NF11336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11336_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 43926451 - 43926749
Alignment:
| Q |
1 |
caggcatgggattttcatagattttaagtgcattttcacaatatgattttgattcccttaccttccatgtcctattatacaactcagccaaacgtataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43926451 |
caggcatgggattttcatagattttaagtgcattttcacaatatgattttgattcccttaccttccatgtcctattatacaactcagccaaacgtactaa |
43926550 |
T |
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| Q |
101 |
gaccgatccaaccgaaggatgattccctcctttgtgagtcttgaaaaccgctaacgcctttttatatgccaagatggcctcatcgtatcgagccaatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43926551 |
gaccgatccaaccgaaggatgattccctcctttgtgagtcttgaaaaccgctaacgcctttttatatgccaagatggcctcatcgtatcgagccaatgat |
43926650 |
T |
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| Q |
201 |
aggaatgtgtctccaatgctgcaatcaacagacgccacttccacttcttggccatttgataccattgccatgcttgctaaaacaaggtgctcctatgct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43926651 |
aggaatgtgtctccaatgctgcaatcaacagacgccacttccacttcttggccatttgataccattgccatgcttgctaaaacaaggtgctccaatgct |
43926749 |
T |
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Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 35115431 - 35115719
Alignment:
| Q |
1 |
caggcatgggattttcatagattttaagtgcattttcacaatatgattttgattcccttaccttccatgtcctattatacaactcagccaaacgtataaa |
100 |
Q |
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||||||| ||||| ||||| ||||||||||| || || ||||| || ||||||||||||| ||||| |||||| |||||||| || |||||||||| ||| |
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| T |
35115431 |
caggcattggattctcatatattttaagtgctttatcgcaatacgactttgattcccttatcttccctgtcctgttatacaaatcggccaaacgtacaaa |
35115530 |
T |
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| Q |
101 |
gaccgatccaaccgaaggatgattccctcctttgtgagtcttgaaaaccgctaacgcctttttatatgccaagatggcctcatcgtatcgagccaatgat |
200 |
Q |
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|||||| || || | ||||||||| |||||||| ||||||||||| |||| ||| |||| |||||| |||| ||||| || ||||||| ||| ||| |
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| T |
35115531 |
gaccgaccctactgctggatgattctctcctttgctggtcttgaaaactgctagcgctttttcatatgcaaagacagcctcgtcatatcgagacaaggat |
35115630 |
T |
|
| Q |
201 |
aggaatgtgtctccaatgctgcaatcaacagacgccacttccacttcttggccatttgataccattgccatgcttgctaaaacaaggtg |
289 |
Q |
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| | ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
35115631 |
aagtatgtgtctccaatgctgcagtcaacagatgccacttccgcttcttggccatttgcaaccattgccatgctggctaaaacaaggtg |
35115719 |
T |
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