View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_high_1 (Length: 563)
Name: NF11337_high_1
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 61 - 546
Target Start/End: Complemental strand, 4067484 - 4067001
Alignment:
| Q |
61 |
tattagtagtctgtacacaccactactcaaacagacagcagagttccaaagttagcaagcaacgatgacttttgctccagcaacgattctctctttcatt |
160 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4067484 |
tattattagtctgtacacaccactactcaaacagacagcagagttccaaagttagcaagcaacgatgacttttgctccagcaacgattctctctttcatt |
4067385 |
T |
|
| Q |
161 |
ctccttttttcaatgattctatcatcgtcttcggcaaaagtagtagaagaagaattttctgaggagttgttacttaaacccttacctgatcgtaaggttc |
260 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4067384 |
ctccttttttcaatgattctatcatcgtcttcagcaaaagtagtagaagaagaattttctgaggagttgttacttaaacccttacctgatcgtaaggttc |
4067285 |
T |
|
| Q |
261 |
tctcacattttcactttcaaaccaaagctcctattcatcaagattccttcgcacgtcaccaccacctcttccccaaatccattgctcaactgnnnnnnnn |
360 |
Q |
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| T |
4067284 |
tctcacattttcactttcaaaccaaagctcctattcatcaagattccttcgcacgtcaccaccatctcttccccaaatccattgctcaactg--gtgtgt |
4067187 |
T |
|
| Q |
361 |
nnnnnnncacttttcacttttctcgctaannnnnnnnattgtatggttaattatgttattagcatcgttgtgcagtaagtgcgacttataaatccctcat |
460 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4067186 |
gtgtatgcacttttcacttttctcgctaattttttttattgtatggttaattatgttattagcatcgttgtgcagtaagtgcgacttataaatccctcat |
4067087 |
T |
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| Q |
461 |
cgttataagtaaaaggatcaataaactcgttttataaagtgtaatgtctttctcacatgtattaagtccaatgtggatatgatccc |
546 |
Q |
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| T |
4067086 |
cgttattagtaaaaggaccaataaactcgttttttaaagtgtaatgtctttctcacatgtattaagtccaatgtggatatgatccc |
4067001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 199 - 348
Target Start/End: Complemental strand, 4062743 - 4062591
Alignment:
| Q |
199 |
agtagtagaagaagaattttctgaggagttgttacttaaacccttacctgatcgtaaggttctctcacattttcactttcaaaccaaag---ctcctatt |
295 |
Q |
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||||| ||||||||||||||| ||||| ||| ||||||||||| |||| ||||| || |||||| | |||||||| || |||||| ||| |||||||| |
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| T |
4062743 |
agtagcagaagaagaattttcagaggaattgctacttaaacccctaccagatcgcaaagttctcgcgcattttcatttccaaaccgaagctcctcctatt |
4062644 |
T |
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| Q |
296 |
catcaagattccttcgcacgtcaccaccacctcttccccaaatccattgctca |
348 |
Q |
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||| |||| |||||||| ||||| ||||| |||||||||||||||||| |||| |
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| T |
4062643 |
catgaagactccttcgcccgtcatcaccatctcttccccaaatccatttctca |
4062591 |
T |
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