View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_high_10 (Length: 350)
Name: NF11337_high_10
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 10683368 - 10683690
Alignment:
| Q |
19 |
gatattgcataacgtacaactaaaagtaaccagaaaaataaataaattagactaccaatgtaaaacgtggaatccataatccaacataaacaagaagtaa |
118 |
Q |
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| T |
10683368 |
gatattccataacgtacaactaaaagtaaccagaaaaataaataaattagactaccaatgtaaaatgtggaatccataatccaacatacacaagaagtaa |
10683467 |
T |
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| Q |
119 |
caaaccttaatgtcatcatcaatagaaggagaaaagaatacatcaatttcacgcacgactgtatcttcttcattgtcttcatccattggattgacttgtg |
218 |
Q |
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| T |
10683468 |
caaaccttaatgtcatcatcaatagaaggagaaaagaatacatcaatttcacgcacgactgtatcttcttcattgtcttcatccattggattgacttgtg |
10683567 |
T |
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| Q |
219 |
ttgaatccttttcagcctcagtcatttctacatccacggaatcgacatttcttgaatcatgttcaggttcagacttcgattcagtttcaactttaacagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10683568 |
ttgaatccttttcagcctcagtcatttctacatccacggaatcgacatttcttgaatcatgttcaggttcagacttcgattcagcttcaactttaacagt |
10683667 |
T |
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| Q |
319 |
accattatgttcagacttcatct |
341 |
Q |
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||||||||||||||||||||||| |
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| T |
10683668 |
accattatgttcagacttcatct |
10683690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 7512014 - 7511939
Alignment:
| Q |
116 |
taacaaaccttaatgtcatcatcaatagaaggagaaaagaatacatcaatttcacgcacgactgtatcttcttcat |
191 |
Q |
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||||||||||| |||||| |||||||||||| ||||| | |||||||||||||| || |||||||| ||||||| |
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| T |
7512014 |
taacaaaccttcgtgtcattatcaatagaaggcgaaaaatacacatcaatttcacgaacaactgtatcctcttcat |
7511939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 7512628 - 7512545
Alignment:
| Q |
19 |
gatattgcataacgtacaactaaaagtaaccagaaaaataaataaattagactaccaatgtaaaacgtggaatccataatccaaca |
104 |
Q |
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|||||||||| || ||||||||||| ||||| ||||| ||| ||||||||||||| |||||| || |||||||| |||||||| |
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| T |
7512628 |
gatattgcatgacatacaactaaaaacaaccaaaaaaacaaa--aattagactaccacagtaaaatgtagaatccattatccaaca |
7512545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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