View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11337_high_22 (Length: 208)
Name: NF11337_high_22
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 26374842 - 26374642
Alignment:
| Q |
1 |
agcgtgctaggtcctacctttgttgctatgccggttttcgccttctatatttgtggagtttatccgaaaaatctgatacatttttattgaatatcgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26374842 |
agcgtgctaggtcctacctttgttgctatgtcggttttcgccttctatatttgtggagtttatccgaaaaatctgatacatttttattgaatatcgaata |
26374743 |
T |
|
| Q |
101 |
acttattttttgttttgggtacgcaaaccaaatgatgacactgatatttacgaggatgggaagctcggcgagaaaaccttaacatctgaaagttctatca |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26374742 |
acttattttttgttttaggtacgcaaaccaaatgatgacactgatatttacgaggatgggaagctcggcgagaaaaccttaacatctgaaagttctatca |
26374643 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
26374642 |
c |
26374642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University