View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_high_3 (Length: 496)
Name: NF11337_high_3
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 49978684 - 49979174
Alignment:
| Q |
1 |
catcatcacccaacaatgccattgagtttcccaacatccttctctgctgcaggttcatcatcctcaacatctcaagttcaacaatatctgtactcttcac |
100 |
Q |
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| T |
49978684 |
catcatcacccaacaatgccattgagtttcccaacatccttctctgctgcaggttcatcatcctcaacatctcaagttcaacaatatctgtactcttcac |
49978783 |
T |
|
| Q |
101 |
catcaaggcctatgtctttccctccacatttggttcctcacgattaccgtcatgtgagtcatatgatgagtaacaatgggcagcaatatgtggcaggtgg |
200 |
Q |
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| T |
49978784 |
catcaaggcctatgtctttccctccacatttggttcctcacgattaccgtcatgtgagtcatatgatgagtaacaatgggcagcaatatgtggcaggtgg |
49978883 |
T |
|
| Q |
201 |
aggtgagtcaagttacacgtgcataggtgcaccggttggacaaggttttccagatcatcatccttcaacgatcaatcgatttcaagatggtatgtaatgg |
300 |
Q |
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| T |
49978884 |
aggtgagtcaagttacacgtgcataggtgcaccggttggacaaggttttccagatcatcatccttcaacgatcaatcgatttcaagatggtatgtaatgg |
49978983 |
T |
|
| Q |
301 |
agtgatattttgttatcataaagacacgctagctatctgtaatgtatgtatgtatatcc--------------agagagagagatagatgattcataatt |
386 |
Q |
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| T |
49978984 |
agtgatattttgttatcataaagacacgctagctatctgtaatgtatgtatgtatatccagagagagagagagagagagagagatagatgattcataatt |
49979083 |
T |
|
| Q |
387 |
aattaaggtgctgacagatagctagggttatgactcatcatgagtaagaaagaagagatagcaacaacagtaactaggtgctgcagctttt |
477 |
Q |
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| T |
49979084 |
aattaaggtgctgacagatagctagggttatgactcatcatgagtaagaaagaagagatagcaacaacagtaactaggtgctgcagctttt |
49979174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 49952178 - 49952122
Alignment:
| Q |
193 |
gcaggtggaggtgagtcaagttacacgtgcataggtgcaccggttggacaaggtttt |
249 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
49952178 |
gcaggtggtggtgagtcaagttacacttgcataggtgcaccggttagacaaggtttt |
49952122 |
T |
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