View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_high_4 (Length: 493)
Name: NF11337_high_4
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 29572233 - 29572400
Alignment:
| Q |
18 |
atgaattcaagagtggtcatggattcagaatcatgggcctatggattattttgattttagtannnnnnnnnnnnnnnnn-aacattgatgatatggctta |
116 |
Q |
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| T |
29572233 |
atgaattcaagagtggtcatggattcagaatcatgggcctatggattattttgattttagtattttttttttctttttttaacattgatgatatggctta |
29572332 |
T |
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| Q |
117 |
catgtaatgttattataggttgtttcaaagaataaagagtgaatcaggattcaaggaaaatataccaa |
184 |
Q |
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| T |
29572333 |
catgtaatgttattataggttgtttcaaagaataaagagtgaatcaggattcaaggaaaatataccaa |
29572400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 29572456 - 29572569
Alignment:
| Q |
240 |
acattatgataaaagtgcaaaaagaattatgtatatgcttatgtgtcgatttgttgtttctcctggtcatggcacacttatttatttgtttgtcatttgt |
339 |
Q |
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| T |
29572456 |
acattatgataaaagtgcaaaaagaattatgtatatgcttatgtgtcgatttgttgtttcttctggtcatggcacacttatttatctgtttgtcatttgt |
29572555 |
T |
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| Q |
340 |
attatttaaatgaa |
353 |
Q |
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| T |
29572556 |
attatttaaatgaa |
29572569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 29572641 - 29572695
Alignment:
| Q |
425 |
ttgaacaataataacaattactttacttttgatatgcattggtagtgtagctgat |
479 |
Q |
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| T |
29572641 |
ttgaacaataataacaattactttacttttgatatatattggtagtgtagctgat |
29572695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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