View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_high_7 (Length: 409)
Name: NF11337_high_7
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 4486837 - 4486456
Alignment:
| Q |
18 |
attaatgcccttcttcatccttgatttatcaattacactaaaaaagatgtacacctttacttattattaattcaataaatatccttgtatgtatgaagtt |
117 |
Q |
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| T |
4486837 |
attaatgcccttcttcatccttgatttatcaattacactcaaaaagatgtacacctttacttattattaattcaataaatatccttgtatgtatgaagtt |
4486738 |
T |
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| Q |
118 |
gaattcagtcagaagtgagactaactatttatgaattcaagtattgtaatatcggatatatgaactaaagatcttgtaatttcatgcagatgttccagaa |
217 |
Q |
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| T |
4486737 |
gaattcagtcagaagtgagactaactatttatgaattcaagtattgtaatatcggatatatgaactaaagatcgtgtaatttcatgcagatgttccagaa |
4486638 |
T |
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| Q |
218 |
aggctctcctcttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcagagttgaaaagattggaagaaaagtggttaattagctcacag |
317 |
Q |
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| T |
4486637 |
aggctctccccttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcagagttgaaaagattggaagaaaagtggttaattagctcacag |
4486538 |
T |
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| Q |
318 |
gattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagcttatgggtcctatatgtcatctctg |
399 |
Q |
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| T |
4486537 |
gattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagcttatgggtcctatatgtcatgtctg |
4486456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 204 - 400
Target Start/End: Complemental strand, 4480528 - 4480333
Alignment:
| Q |
204 |
cagatgttccagaaaggctctcctcttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcagagttgaaaagattggaagaaaagtggt |
303 |
Q |
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| T |
4480528 |
cagatgttccagaaaggttctcctctcgtgaaagatgtatcgaaagctatattacatctctcagaaaatgcagagttgaagagattggaagaaaagtgg- |
4480430 |
T |
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| Q |
304 |
taattagctcacaggattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagcttatgggtcctatatgtcatctctgc |
400 |
Q |
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|| ||| |||||||||||||||||| || || |||||||| |||| ||| |||||||||| |||||||||||||||| |||||||| |||||||| |
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| T |
4480429 |
tacttacctcacaggattgctccaataatgtgacatcctccaacggtacggatagtttgaaacttggaagcttatgggctctatatgttatctctgc |
4480333 |
T |
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