View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11337_high_8 (Length: 392)

Name: NF11337_high_8
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11337_high_8
NF11337_high_8
[»] chr1 (23 HSPs)
chr1 (43-377)||(25679842-25680182)
chr1 (115-222)||(19865276-19865383)
chr1 (115-223)||(50092297-50092405)
chr1 (115-224)||(12161846-12161955)
chr1 (115-223)||(8940993-8941101)
chr1 (115-223)||(9109974-9110082)
chr1 (115-222)||(6412053-6412160)
chr1 (168-223)||(20408159-20408214)
chr1 (115-222)||(23457929-23458036)
chr1 (115-222)||(41120737-41120844)
chr1 (168-222)||(46339445-46339499)
chr1 (168-224)||(18890547-18890603)
chr1 (115-219)||(46785961-46786065)
chr1 (115-222)||(4340439-4340546)
chr1 (168-215)||(9464188-9464235)
chr1 (168-223)||(17661135-17661190)
chr1 (168-222)||(28229455-28229509)
chr1 (168-222)||(46790085-46790139)
chr1 (115-224)||(12720841-12720950)
chr1 (85-222)||(19081730-19081867)
chr1 (85-222)||(19129618-19129755)
chr1 (168-216)||(20290327-20290374)
chr1 (183-223)||(48522618-48522658)
[»] chr3 (24 HSPs)
chr3 (85-223)||(18380022-18380160)
chr3 (85-222)||(19269864-19270001)
chr3 (115-224)||(29236072-29236181)
chr3 (115-222)||(13921353-13921460)
chr3 (115-222)||(25882598-25882705)
chr3 (168-223)||(29956453-29956508)
chr3 (168-223)||(30005608-30005663)
chr3 (85-222)||(1310959-1311096)
chr3 (115-224)||(19223477-19223586)
chr3 (115-224)||(48404888-48404997)
chr3 (115-223)||(3461309-3461417)
chr3 (115-223)||(8428199-8428307)
chr3 (115-215)||(8546273-8546373)
chr3 (115-223)||(26098841-26098949)
chr3 (115-222)||(26390634-26390741)
chr3 (168-223)||(27449169-27449224)
chr3 (115-222)||(43329763-43329870)
chr3 (168-226)||(7623527-7623585)
chr3 (168-222)||(21816802-21816856)
chr3 (165-223)||(36543827-36543885)
chr3 (115-224)||(5260965-5261074)
chr3 (168-209)||(28859672-28859713)
chr3 (85-145)||(27212858-27212918)
chr3 (167-223)||(36564438-36564494)
[»] chr4 (17 HSPs)
chr4 (85-222)||(5473849-5473986)
chr4 (88-226)||(19839182-19839320)
chr4 (85-222)||(45532579-45532716)
chr4 (115-222)||(4586758-4586865)
chr4 (115-223)||(7111945-7112053)
chr4 (115-222)||(25026587-25026694)
chr4 (93-221)||(4627079-4627207)
chr4 (168-224)||(54539369-54539425)
chr4 (168-223)||(9670478-9670533)
chr4 (168-223)||(12106065-12106120)
chr4 (115-222)||(13028816-13028923)
chr4 (115-193)||(18744099-18744177)
chr4 (168-222)||(22168351-22168405)
chr4 (85-222)||(32175737-32175874)
chr4 (86-222)||(9913259-9913395)
chr4 (168-216)||(37378629-37378677)
chr4 (168-224)||(45091344-45091400)
[»] chr7 (18 HSPs)
chr7 (85-224)||(23750734-23750873)
chr7 (115-223)||(27806050-27806158)
chr7 (85-225)||(22486396-22486536)
chr7 (85-213)||(26415426-26415554)
chr7 (168-223)||(31425510-31425565)
chr7 (168-222)||(48933221-48933275)
chr7 (168-225)||(3872184-3872241)
chr7 (85-145)||(816268-816328)
chr7 (168-224)||(18217914-18217970)
chr7 (115-222)||(42926419-42926527)
chr7 (115-222)||(3904478-3904585)
chr7 (115-222)||(20923958-20924065)
chr7 (168-223)||(23539317-23539372)
chr7 (115-222)||(23699825-23699932)
chr7 (115-222)||(28800910-28801017)
chr7 (168-222)||(47523650-47523704)
chr7 (168-225)||(6849208-6849265)
chr7 (168-224)||(23232124-23232180)
[»] scaffold0009 (2 HSPs)
scaffold0009 (107-221)||(182554-182668)
scaffold0009 (115-222)||(219668-219775)
[»] chr2 (13 HSPs)
chr2 (85-223)||(41736170-41736308)
chr2 (115-223)||(18551252-18551360)
chr2 (139-216)||(12860235-12860312)
chr2 (115-216)||(28262392-28262493)
chr2 (115-222)||(14757121-14757228)
chr2 (115-222)||(43408511-43408618)
chr2 (168-223)||(44476374-44476429)
chr2 (168-222)||(12779681-12779735)
chr2 (168-222)||(20065074-20065128)
chr2 (168-222)||(37552308-37552362)
chr2 (85-222)||(2556093-2556230)
chr2 (115-223)||(21293710-21293818)
chr2 (174-222)||(32009040-32009088)
[»] chr6 (17 HSPs)
chr6 (115-223)||(20182177-20182285)
chr6 (115-223)||(22153706-22153814)
chr6 (115-223)||(26224460-26224568)
chr6 (115-222)||(15448417-15448524)
chr6 (85-223)||(9892965-9893103)
chr6 (168-222)||(22579349-22579403)
chr6 (115-216)||(5192195-5192296)
chr6 (115-224)||(6598496-6598605)
chr6 (168-223)||(6605495-6605550)
chr6 (85-216)||(25398004-25398135)
chr6 (107-222)||(28668124-28668239)
chr6 (115-222)||(30833960-30834067)
chr6 (168-222)||(12160847-12160901)
chr6 (168-222)||(24661009-24661063)
chr6 (168-222)||(28364996-28365050)
chr6 (168-224)||(495625-495681)
chr6 (168-216)||(18492454-18492502)
[»] scaffold0002 (1 HSPs)
scaffold0002 (115-222)||(439995-440102)
[»] chr8 (24 HSPs)
chr8 (85-224)||(6817054-6817193)
chr8 (85-222)||(3823133-3823270)
chr8 (168-224)||(16061937-16061993)
chr8 (115-223)||(17810328-17810436)
chr8 (168-228)||(25274680-25274740)
chr8 (115-223)||(27910763-27910871)
chr8 (115-223)||(27957182-27957290)
chr8 (168-222)||(42700657-42700711)
chr8 (168-225)||(24193193-24193250)
chr8 (115-227)||(22939343-22939455)
chr8 (170-222)||(40289421-40289473)
chr8 (168-223)||(8555303-8555358)
chr8 (115-222)||(23752286-23752393)
chr8 (85-212)||(31344182-31344309)
chr8 (168-222)||(4331061-4331115)
chr8 (168-222)||(19240950-19241004)
chr8 (168-222)||(19314134-19314188)
chr8 (168-222)||(19488061-19488115)
chr8 (168-222)||(24576024-24576078)
chr8 (168-222)||(25000431-25000485)
chr8 (168-222)||(27869321-27869375)
chr8 (167-215)||(14304311-14304359)
chr8 (115-215)||(18010067-18010167)
chr8 (115-222)||(24636682-24636790)
[»] chr5 (17 HSPs)
chr5 (168-222)||(28265475-28265529)
chr5 (85-222)||(12045729-12045866)
chr5 (115-222)||(618326-618433)
chr5 (168-223)||(4125187-4125242)
chr5 (115-222)||(16631874-16631981)
chr5 (115-222)||(24138841-24138948)
chr5 (85-222)||(23408982-23409120)
chr5 (86-224)||(25652581-25652719)
chr5 (85-222)||(7888799-7888936)
chr5 (115-222)||(16121839-16121946)
chr5 (115-222)||(17039631-17039738)
chr5 (168-223)||(38837670-38837725)
chr5 (116-222)||(23974576-23974682)
chr5 (168-222)||(36196479-36196533)
chr5 (85-222)||(20959510-20959647)
chr5 (173-222)||(35620344-35620393)
chr5 (85-145)||(27428089-27428149)
[»] scaffold0007 (2 HSPs)
scaffold0007 (115-222)||(3774-3881)
scaffold0007 (85-223)||(202776-202914)
[»] scaffold0001 (3 HSPs)
scaffold0001 (85-222)||(84305-84442)
scaffold0001 (115-216)||(8116-8217)
scaffold0001 (115-216)||(21848-21949)
[»] scaffold0184 (1 HSPs)
scaffold0184 (168-216)||(7541-7589)
[»] scaffold0019 (1 HSPs)
scaffold0019 (168-223)||(173531-173585)
[»] scaffold0076 (1 HSPs)
scaffold0076 (168-222)||(26568-26622)
[»] scaffold0062 (1 HSPs)
scaffold0062 (168-222)||(44002-44056)
[»] scaffold0023 (1 HSPs)
scaffold0023 (168-222)||(39703-39757)
[»] scaffold0014 (1 HSPs)
scaffold0014 (115-225)||(22243-22353)
[»] scaffold0128 (1 HSPs)
scaffold0128 (168-216)||(10669-10717)
[»] scaffold0024 (1 HSPs)
scaffold0024 (85-145)||(112330-112390)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 43 - 377
Target Start/End: Original strand, 25679842 - 25680182
Alignment:
Q  43 gacttcatctaacatgcacaagcaaacactactnnnnnnnncagtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaat 142  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25679842 gacttcatctaacatgcacaagcaaacactactaaaagaaacagtgaggaaaatttagagatgcaaattgttaaatccctctttaattctgtcaacaaat 25679941  T
Q  143 tttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttctaatagt---gaaaatggtcttgaat-- 237  Q
     |||||| |||||||||||||  |||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||   ||||||||||||||||      
T  25679942 attatgacaaagaaattagtttaagatttcatttttccc-tcactaattttcgtctctaattttgctttttttaatagtactgaaaatggtcttgaatat 25680040  T
Q  238 --catgcacaaatattttcaacattaaatcaataaatcacatcatatctcattaattactgatgagatttattgattcaataataggaaagtatcttata 335  Q
      |||||||||| ||||| |||||||||||||||||| ||||||||| | ||| ||||||||||| |||||||||| ||||||||| |||||||||||||    
T  25680041 atcatgcacaaacatttttaacattaaatcaataaattacatcatattttattgattactgatgaaatttattgatccaataatagaaaagtatcttata 25680140  T
Q  336 cacaatataattagacatgtcttacttgagcaccatagaatt 377  Q
    |||||| ||| ||||||||||||||||| |||||||| ||||    
T  25680141 cacaatgtaactagacatgtcttacttgtgcaccatataatt 25680182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 19865276 - 19865383
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  || ||||||||||| || |||||||||||| |||||||||||||||||||    
T  19865276 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttcattttttccgtcactaattttcctcgctaattttactttttc 19865375  T
Q  215 taatagtg 222  Q
    || |||||    
T  19865376 tagtagtg 19865383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 50092405 - 50092297
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  ||||||| |||| | |||||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  50092405 aaatccctctctaattccgtcactaaattttgtgatcatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttc 50092306  T
Q  215 taatagtga 223  Q
    || ||||||    
T  50092305 tagtagtga 50092297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 12161846 - 12161955
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  | |||||| ||  |  ||||||||||| || ||| |||||||| |||||||||||||||||||    
T  12161846 aaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcaataattttcctcgctaattttactttttc 12161945  T
Q  215 taatagtgaa 224  Q
    || |||||||    
T  12161946 tagtagtgaa 12161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 8941101 - 8940993
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||| ||||| ||||||||||   |||||||| ||| ||| |||| ||  || ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  8941101 aaattcctctctaattccgtcgctaaattttacgatcaaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttc 8941002  T
Q  215 taatagtga 223  Q
    || ||||||    
T  8941001 tagtagtga 8940993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 9110082 - 9109974
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  |||||||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  9110082 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 9109983  T
Q  215 taatagtga 223  Q
    || ||||||    
T  9109982 tagtagtga 9109974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 6412160 - 6412053
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||||||||||||||||||||  |||||||  ||  |||||||| ||  |  ||||||||||| || | |||||||| | ||||||||||| |||||||    
T  6412160 aaatccctctttaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgttactaatttccctcgctaattttgctttttc 6412061  T
Q  215 taatagtg 222  Q
    || |||||    
T  6412060 tagtagtg 6412053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 20408214 - 20408159
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||||| ||||||||||| ||||||||| ||||||    
T  20408214 atttcattttttccgtcactaattttcctcgctaattttgctttttctagtagtga 20408159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 23457929 - 23458036
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  | |||||| ||  |  ||||||||||| || ||| |||||||| |||||||||||||||||||    
T  23457929 aaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcaataattttcctcgctaattttactttttc 23458028  T
Q  215 taatagtg 222  Q
    || |||||    
T  23458029 tagtagtg 23458036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 41120844 - 41120737
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  |||||||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  41120844 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttc 41120745  T
Q  215 taatagtg 222  Q
    || |||||    
T  41120744 tattagtg 41120737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 46339499 - 46339445
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||||| ||||||||||| ||||||||| |||||    
T  46339499 atttcattttttccgtcactaattttcctcgctaattttgctttttctagtagtg 46339445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 18890603 - 18890547
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    ||||||||||| || |||||||||| | ||||||||||| |||||||| ||||||||    
T  18890603 atttcattttttccatcactaatttccctcgctaattttgctttttctgatagtgaa 18890547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 46786065 - 46785961
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| || | ||  || ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  46786065 aaatccctctctaattccgtcattaaattttgcgaccaaggaacttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttc 46785966  T
Q  215 taata 219  Q
    |||||    
T  46785965 taata 46785961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 4340439 - 4340546
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||| | | ||||||||| |||||||    
T  4340439 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttcccttgctaattttgctttttc 4340538  T
Q  215 taatagtg 222  Q
    ||||||||    
T  4340539 taatagtg 4340546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 9464188 - 9464235
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttct 215  Q
    ||||||||||| || |||||||||| |||| |||||||||||||||||    
T  9464188 atttcattttttccgtcactaatttccgtcactaattttactttttct 9464235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 17661135 - 17661190
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    |||| |||||| || |||||||||| ||||| ||||||| ||||||||||||||||    
T  17661135 attttattttttccgtcactaatttccgtcgttaattttgctttttctaatagtga 17661190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 28229509 - 28229455
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  28229509 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 28229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 46790085 - 46790139
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  46790085 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 46790139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 12720841 - 12720950
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  |||| |||||| || |||||||||| | ||||||||||| |||||||    
T  12720841 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaattttattttttccgtcactaatttccctcgctaattttgctttttc 12720940  T
Q  215 taatagtgaa 224  Q
    || |||||||    
T  12720941 tagtagtgaa 12720950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 19081730 - 19081867
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| || |||||||| | |||  || |||||||||| |||||| ||||  |||||||| ||  ||| |||| ||  || |||| |||||| || ||    
T  19081730 agtgagggaattttagagagggaaaacgtgaaatccctctctaattctgtcactaaattttacgaccaaggaatttgtgagaaattttattttttccatc 19081829  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | || ||||||||||||||| || |||||    
T  19081830 actaatttccctctctaattttactttttttagtagtg 19081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 19129618 - 19129755
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| || |||||||| | |||  || |||||||||| |||||| ||||  |||||||| ||  ||| |||| ||  || |||| |||||| || ||    
T  19129618 agtgagggaattttagagagggaaaacgtgaaatccctctctaattctgtcactaaattttacgaccaaggaatttgtgagaaattttattttttccatc 19129717  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | || ||||||||||||||| || |||||    
T  19129718 actaatttccctctctaattttactttttttagtagtg 19129755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 20290374 - 20290327
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttcta 216  Q
    |||||||||||||  |||||||||| | |||||||||||||||||||||    
T  20290374 atttcatttttccg-tcactaatttccctcgctaattttactttttcta 20290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 48522618 - 48522658
Alignment:
Q  183 tcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    |||||||||||| ||||||||||| ||||||||| ||||||    
T  48522618 tcactaattttcctcgctaattttgctttttctagtagtga 48522658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 18380022 - 18380160
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggaga-tttcatttttcccct 183  Q
    ||||||| |||||||  || | ||| ||| ||||||||||||||||||||||  |||||||| ||| |||||||| || | ||| |||||||||| || |    
T  18380022 agtgagggaaatttaatgagggaaaatgtaaaatccctctttaattccgtcactaaattttacgatcaagaaatttgt-gaagaatttcattttttccgt 18380120  T
Q  184 cactaattttcgtcgctaattttactttttctaatagtga 223  Q
    |||| |||| | ||||||||||||||||||||| ||||||    
T  18380121 cactgatttccctcgctaattttactttttctagtagtga 18380160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 19270001 - 19269864
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | |||  || ||||||||||||||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || ||    
T  19270001 agtgagggaaatttagtgagggaaaacgtaaaatccctctttaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtc 19269902  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | ||||||||||| |||||||||||||||    
T  19269901 actaatttccctcgctaattttgctttttctaatagtg 19269864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 29236072 - 29236181
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||||| || ||  || ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  29236072 aaatccctctctaattccgtcactaaattttgcgaccaagaattttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttc 29236171  T
Q  215 taatagtgaa 224  Q
    ||||||||||    
T  29236172 taatagtgaa 29236181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 13921353 - 13921460
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||||| ||||||||||| |||||||    
T  13921353 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 13921452  T
Q  215 taatagtg 222  Q
    || |||||    
T  13921453 tagtagtg 13921460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 25882598 - 25882705
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||| ||  ||  |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  25882598 aaatccctctctaattccgtcactaaattttacgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 25882697  T
Q  215 taatagtg 222  Q
    ||||||||    
T  25882698 taatagtg 25882705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 29956453 - 29956508
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||||||||||||| ||||||    
T  29956453 atttcattttttccatcactaatttccctcgctaattttactttttctagtagtga 29956508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 30005608 - 30005663
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||||||||||||| ||||||    
T  30005608 atttcattttttccatcactaatttccctcgctaattttactttttctagtagtga 30005663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 1311096 - 1310959
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| |||| |||  || |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |   |||||||||| || ||    
T  1311096 agtgagggaaatttagtgatggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggattttcattttttccgtc 1310997  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||||| | ||||||||| ||||||||| |||||    
T  1310996 actaattttccttgctaattttgctttttctagtagtg 1310959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 19223477 - 19223586
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||| ||  ||| |||| ||  |  ||||||||||| || |||| ||||| | ||||||||||| |||||||    
T  19223477 aaatccctctctaattccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcaccaatttccctcgctaattttgctttttc 19223576  T
Q  215 taatagtgaa 224  Q
    || |||||||    
T  19223577 tagtagtgaa 19223586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 48404888 - 48404997
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  48404888 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 48404987  T
Q  215 taatagtgaa 224  Q
    || |||||||    
T  48404988 tagtagtgaa 48404997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 3461417 - 3461309
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||| |||||||| ||  |  |||| |||||| |  |||||||||| | ||||||||||| |||||||    
T  3461417 aaatccctctctaattccgtcattaaattttgcgatcaagaaatttgtgaggaattttattttttctgtcactaatttccttcgctaattttgctttttc 3461318  T
Q  215 taatagtga 223  Q
    || ||||||    
T  3461317 tagtagtga 3461309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 8428199 - 8428307
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||| |||| |||||||||||  |||||||| ||  ||| |||| ||  |  ||||||||||| || |||||||||| | |||||||||||| ||||||    
T  8428199 aaatctctctctaattccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttattttttc 8428298  T
Q  215 taatagtga 223  Q
    || ||||||    
T  8428299 tagtagtga 8428307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 8546273 - 8546373
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||| | | |||| ||  |  ||||||||||| || |||||||||||| ||||||||||| |||||||    
T  8546273 aaatccctctctaattccgtcactaaattttgcgatcatggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 8546372  T
Q  215 t 215  Q
    |    
T  8546373 t 8546373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 26098841 - 26098949
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  26098841 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttc 26098940  T
Q  215 taatagtga 223  Q
    || ||||||    
T  26098941 tagtagtga 26098949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 26390741 - 26390634
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  ||||||| |||  ||| |||| ||  |  ||||||||||| || ||||||||||   ||||||||||| |||||||    
T  26390741 aaatccctctctaattccgtcactaaattttgtgaccaaggaatttgtgaggaatttcattttttccgtcactaatttctctcgctaattttgctttttc 26390642  T
Q  215 taatagtg 222  Q
    || |||||    
T  26390641 tagtagtg 26390634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 27449169 - 27449224
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||    
T  27449169 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtga 27449224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 43329870 - 43329763
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||| ||| |||||||||||  |||||||| ||  ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  43329870 aaatccttctctaattccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 43329771  T
Q  215 taatagtg 222  Q
    || |||||    
T  43329770 tagtagtg 43329763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 7623585 - 7623527
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaaaa 226  Q
    ||||||||||| || |||||||||| | ||||| ||||| ||||||||| |||||||||    
T  7623585 atttcattttttccgtcactaatttccctcgctgatttttctttttctagtagtgaaaa 7623527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 21816802 - 21816856
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  21816802 atttcattttttccgtcactaatttccctcgctaatttttctttttctagtagtg 21816856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 36543827 - 36543885
Alignment:
Q  165 gagatttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||| |||||| || |||||||||||| || |||||||| ||||||||| ||||||    
T  36543827 gagattttattttttccatcactaattttcctccctaatttttctttttctagtagtga 36543885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 5260965 - 5261074
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||| | || |||||||| |||||||    
T  5260965 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttc 5261064  T
Q  215 taatagtgaa 224  Q
    || |||||||    
T  5261065 tagtagtgaa 5261074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 28859672 - 28859713
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttact 209  Q
    ||||||||||| || |||||||||||| ||||||||||||||    
T  28859672 atttcattttttccgtcactaattttcctcgctaattttact 28859713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 27212918 - 27212858
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaatttt 145  Q
    ||||||| ||||||||||| | |||  || ||||||||||||||||||||||  |||||||    
T  27212918 agtgagggaaatttagagaggaaaaacgtgaaatccctctttaattccgtcactaaatttt 27212858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 36564494 - 36564438
Alignment:
Q  167 gatttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||| |||||| || |||||||||||| || |||||||| ||||||||| ||||||    
T  36564494 gattttattttttccatcactaattttcctccctaatttttctttttctagtagtga 36564438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 5473849 - 5473986
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    |||||||||||||||| || | |||  || ||||||||||||||||||||||  |||||||  ||  ||| |||| ||  |  |||||||||||||| ||    
T  5473849 agtgaggaaaatttagtgagggaaaacgtaaaatccctctttaattccgtcactaaattttgcgaccaaggaattggtgaggaatttcatttttcccgtc 5473948  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | ||||||||||| ||||||||| |||||    
T  5473949 actaatttccctcgctaattttgctttttctagtagtg 5473986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 19839182 - 19839320
Alignment:
Q  88 gaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcact 187  Q
    ||||||||||||| || | |||  || |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  || ||||||||||| || |||||    
T  19839182 gaggaaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttcattttttccgtcact 19839281  T
Q  188 aattttcgtcgctaattttactttttctaatagtgaaaa 226  Q
    ||||| | ||||||||||| ||||||||| |||||||||    
T  19839282 aatttccctcgctaattttgctttttctagtagtgaaaa 19839320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 45532716 - 45532579
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | |||  || |||||||||| |||||||||||  |||||||  ||| |||||||| ||  |  ||||||||||| || ||    
T  45532716 agtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcattaaattttgcgatcaagaaatttgtgaggaatttcattttttccgtc 45532617  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | ||| ||||||| |||||||||||||||    
T  45532616 actaatttccctcgttaattttgctttttctaatagtg 45532579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 4586865 - 4586758
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||| ||| ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  4586865 aaatccctctctaattccgtcactaaattttacgatcaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 4586766  T
Q  215 taatagtg 222  Q
    || |||||    
T  4586765 tagtagtg 4586758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 7112053 - 7111945
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  |||||||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  7112053 aaatccctctataattccgtcactaaatttttcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 7111954  T
Q  215 taatagtga 223  Q
    || ||||||    
T  7111953 tagtagtga 7111945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 25026587 - 25026694
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||| |||| |||||||||||  |||||||  ||  ||| |||| ||  || ||||||||||| || |||||||||| | || ||||||||||||||||    
T  25026587 aaatctctctctaattccgtcactaaattttgcgactaaggaatttgtgagaaatttcattttttccgtcactaatttccctcactaattttactttttc 25026686  T
Q  215 taatagtg 222  Q
    ||||||||    
T  25026687 taatagtg 25026694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 4627207 - 4627079
Alignment:
Q  93 aaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattt 192  Q
    |||||||| || | ||| ||| ||||| |||| ||||| |||||  |||||||| ||| |||||||| ||  |  ||||||||||| || ||| ||||||    
T  4627207 aaatttagtgagggaaaatgtaaaatctctctctaatttcgtcactaaattttacgatcaagaaatttgtgaggaatttcattttttccgtcattaattt 4627108  T
Q  193 tcgtcgctaattttactttttctaatagt 221  Q
     | ||||||||||| ||||||||| ||||    
T  4627107 ccctcgctaattttgctttttctagtagt 4627079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 54539369 - 54539425
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    ||||||||||| || |||||||||||| | ||||||||| ||||||||| |||||||    
T  54539369 atttcattttttccgtcactaattttccttgctaattttgctttttctagtagtgaa 54539425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 9670533 - 9670478
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||    
T  9670533 atttcattttttccgtcactaatttccctcgctaatttttctttttctagtagtga 9670478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 12106065 - 12106120
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    |||| |||||| || ||| |||||| | ||||||||||||||||||||||||||||    
T  12106065 attttattttttccatcaataatttccctcgctaattttactttttctaatagtga 12106120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 13028923 - 13028816
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  |||||||| ||  |  ||| ||||||| || |||||||||||| ||||||| ||| |||||||    
T  13028923 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaattgcattttttccgtcactaattttcctcgctaagtttgctttttc 13028824  T
Q  215 taatagtg 222  Q
    || |||||    
T  13028823 tagtagtg 13028816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 18744177 - 18744099
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaatttt 193  Q
    |||||||||| |||||||||||  |||||||||||  | |||||| ||  || ||||||||||| || |||||||||||    
T  18744177 aaatccctctctaattccgtcactaaattttatgaccatgaaatttgtgagaaatttcattttttccgtcactaatttt 18744099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 22168351 - 22168405
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  22168351 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 22168405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 32175874 - 32175737
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | |||  || |||||||||| |||||||||||  |||||||  ||  |||||||| ||  |  |||| |||||| || ||    
T  32175874 agtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaattttattttttccgtc 32175775  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | ||| ||||||| ||||||||| |||||    
T  32175774 actaatttccctcgttaattttgctttttctagtagtg 32175737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 9913259 - 9913395
Alignment:
Q  86 gtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctca 185  Q
    |||||| || |||||||| | |||  || |||||||||| |||||| ||||  |||||||  ||  |||||| | ||  | ||||| |||||| || |||    
T  9913259 gtgagggaattttagagagggaaaacgtgaaatccctctctaattctgtcactaaattttgcgaccaagaaaattgtgagggatttaattttttccgtca 9913358  T
Q  186 ctaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||| || ||||||||| |||||||| |||||    
T  9913359 ctaattttcctccctaattttaatttttctagtagtg 9913395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 37378677 - 37378629
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttcta 216  Q
    ||||||||||| || ||| |||||||| ||||||||||| |||||||||    
T  37378677 atttcattttttccgtcaataattttcctcgctaattttgctttttcta 37378629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 45091344 - 45091400
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    ||||||||||| || |||||||||| | |||||||||||  |||||||| |||||||    
T  45091344 atttcattttttccgtcactaatttccctcgctaattttgttttttctagtagtgaa 45091400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 23750873 - 23750734
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | ||| ||| |||||||||| |||||||||||  |||||||| ||  ||| |||| ||  || ||||||||||| || ||    
T  23750873 agtgagggaaatttagtgagggaaaatgtaaaatccctctctaattccgtcactaaattttacgaccaaggaatttgtgagaaatttcattttttccgtc 23750774  T
Q  185 actaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    |||||||| | |||||||||||  |||||||| |||||||    
T  23750773 actaatttccctcgctaattttgttttttctagtagtgaa 23750734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 27806050 - 27806158
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||| ||  ||| |||| ||  |  ||||||||||| || |||||||||||| ||||||||||| |||||||    
T  27806050 aaatccctctctaattccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 27806149  T
Q  215 taatagtga 223  Q
    || ||||||    
T  27806150 tagtagtga 27806158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 22486396 - 22486536
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | |||  || |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || ||    
T  22486396 agtgagggaaatttagtgacggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtc 22486495  T
Q  185 actaattttcgtcgctaattttactttttctaatagtgaaa 225  Q
    |||||||| | ||||||||||| ||||||||| ||||||||    
T  22486496 actaatttccctcgctaattttgctttttctagtagtgaaa 22486536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 26415426 - 26415554
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| || |||||||| | |||  || |||||||||||||||| |||||  |||||||| ||| || ||||| ||  || |||| |||||| || ||    
T  26415426 agtgagggaattttagagaggaaaaacgtaaaatccctctttaatttcgtcactaaattttacgatcaaaaaatttgtgagaaattttattttttccatc 26415525  T
Q  185 actaattttcgtcgctaattttacttttt 213  Q
    |||||||| | || |||||||||||||||    
T  26415526 actaatttccttctctaattttacttttt 26415554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 31425565 - 31425510
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||||||||||    
T  31425565 atttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtga 31425510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 48933221 - 48933275
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||| |||||| || |||||||||||| ||||||||||| |||||||||||||||    
T  48933221 attttattttttccgtcactaattttcctcgctaattttgctttttctaatagtg 48933275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 3872241 - 3872184
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaaa 225  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||||    
T  3872241 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgaaa 3872184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 816328 - 816268
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaatttt 145  Q
    ||||||||||||||||||||| |||  || |||||||||| |||||||||||  |||||||    
T  816328 agtgaggaaaatttagagatggaaaacgtgaaatccctctctaattccgtcactaaatttt 816268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 18217914 - 18217970
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||||    
T  18217914 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgaa 18217970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 42926527 - 42926419
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccc-tcactaattttcgtcgctaattttacttttt 213  Q
    |||||||||| |||||||||||  |||||||  ||  |||||||| ||  |  |||||||||||  || |||||||||||| |||||||||||| |||||    
T  42926527 aaatccctctctaattccgtcactaaattttgcgactaagaaatttgtgaggaatttcatttttttccgtcactaattttcctcgctaattttatttttt 42926428  T
Q  214 ctaatagtg 222  Q
    ||| |||||    
T  42926427 ctagtagtg 42926419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 3904585 - 3904478
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  |||||||| |   |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  3904585 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgcgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 3904486  T
Q  215 taatagtg 222  Q
    || |||||    
T  3904485 tagtagtg 3904478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 20924065 - 20923958
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||| ||||  ||||||| |||  || ||||| ||  ||||||| |||||| || |||||||||| | ||  |||||||||||||||    
T  20924065 aaatccctctctaattctgtcactaaattttgtgaccaacaaatttgtaagagattttattttttccatcactaatttccctccataattttactttttc 20923966  T
Q  215 taatagtg 222  Q
    || |||||    
T  20923965 tagtagtg 20923958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 23539317 - 23539372
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||    
T  23539317 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtga 23539372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 23699932 - 23699825
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||||||||||||||| ||||  |||||||  ||  | |||||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  23699932 aaatccctctttaattctgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttc 23699833  T
Q  215 taatagtg 222  Q
    || |||||    
T  23699832 tagtagtg 23699825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 28800910 - 28801017
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  |||||||| ||  |  ||||||||||| |  |||||||||| | ||||||||||| |||||||    
T  28800910 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttctgtcactaatttccctcgctaattttgctttttc 28801009  T
Q  215 taatagtg 222  Q
    || |||||    
T  28801010 tagtagtg 28801017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 47523704 - 47523650
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | |||||||||||| |||||||| |||||    
T  47523704 atttcattttttccgtcactaatttccctcgctaattttattttttctagtagtg 47523650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 6849265 - 6849208
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaaa 225  Q
    ||||||||||  || |||||||||| | ||||||||||| ||||||||| ||||||||    
T  6849265 atttcattttctccgtcactaatttccctcgctaattttgctttttctagtagtgaaa 6849208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 23232124 - 23232180
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    ||||||||||| || |||||||||| | || |||||||| ||||||||| |||||||    
T  23232124 atttcattttttccgtcactaatttccctctctaattttgctttttctagtagtgaa 23232180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 182554 - 182668
Alignment:
Q  107 aaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaatttt 206  Q
    ||||||| |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  || ||||||||||| || |||||||||| | |||||||||||    
T  182554 aaattgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 182653  T
Q  207 actttttctaatagt 221  Q
    |||||||||| ||||    
T  182654 actttttctagtagt 182668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 219668 - 219775
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| ||||||||| |  |||||||  ||| || ||||| ||  |  ||||||||||| || |||||||||| ||||||||||||| |||||||    
T  219668 aaatccctctctaattccgttactaaattttgcgattaaaaaatttgtgaggaatttcattttttccgtcactaatttccgtcgctaattttgctttttc 219767  T
Q  215 taatagtg 222  Q
    || |||||    
T  219768 tagtagtg 219775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 41736170 - 41736308
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    |||||||||||||||| || | ||| ||| |||||||||| ||||| |||||  |||||||  ||| ||| |||| ||  |  ||||||||||| || ||    
T  41736170 agtgaggaaaatttagtgagggaaaatgtaaaatccctctctaatttcgtcactaaattttgcgatcaaggaatttgtgaggaatttcattttttccgtc 41736269  T
Q  185 actaattttcgtcgctaattttactttttctaatagtga 223  Q
    |||||||| | ||||||||||| ||||||||| ||||||    
T  41736270 actaatttccctcgctaattttgctttttctagtagtga 41736308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 18551360 - 18551252
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||| ||| |||| ||  |  ||||||||||| || |||||||||||| ||||||||||| ||||||     
T  18551360 aaatccctctctaattccgtcactaaattttgcgattaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttt 18551261  T
Q  215 taatagtga 223  Q
    || ||||||    
T  18551260 tagtagtga 18551252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 12860312 - 12860235
Alignment:
Q  139 aaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttcta 216  Q
    |||||||||||| | |||||||||  | ||||||| |||| || |||||||||||| || |||||||| |||||||||    
T  12860312 aaattttatgatgaggaaattagtgagggatttcactttttccgtcactaattttcctccctaattttgctttttcta 12860235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 28262392 - 28262493
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  ||||||| |||  | |||||| ||  |  ||||||||||| || |||||||||| | | |||||||||||||||||    
T  28262392 aaatccctctctaattccgtcactaaattttgtgaccatgaaatttgtgaggaatttcattttttccatcactaatttcccttgctaattttactttttc 28262491  T
Q  215 ta 216  Q
    ||    
T  28262492 ta 28262493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 14757228 - 14757121
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||| |||| |||||||||||  |||||||  ||  |||||||| ||  |  ||||||||||| || ||| |||||||| ||||||||||| |||||||    
T  14757228 aaatctctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcattaattttcttcgctaattttgctttttc 14757129  T
Q  215 taatagtg 222  Q
    || |||||    
T  14757128 tagtagtg 14757121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 43408618 - 43408511
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  |||||||| ||  |  ||||||||||| || |||||||||| | || |||||||| |||||||    
T  43408618 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttc 43408519  T
Q  215 taatagtg 222  Q
    || |||||    
T  43408518 tagtagtg 43408511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 44476429 - 44476374
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||    
T  44476429 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtga 44476374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 12779681 - 12779735
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  12779681 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 12779735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 20065128 - 20065074
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  20065128 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 20065074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 37552308 - 37552362
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  37552308 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 37552362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 2556093 - 2556230
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| || |||||||| | ||| ||| ||||   ||| |||||||||||  ||||||||  |  |||||||| ||  || |||| |||||| || ||    
T  2556093 agtgagggaattttagagagggaaaatgtgaaatttttctctaattccgtcactaaattttacaaccaagaaatttgtgagaaattttattttttccatc 2556192  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||||| || ||||||||||||||| || |||||    
T  2556193 actaattttcctctctaattttactttttttagtagtg 2556230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 21293818 - 21293710
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||| |||| |||||||||||  |||||||| ||  | | |||| ||  || ||||||||||| || |||||||||| | |||||||||||  ||||||    
T  21293818 aaatctctctctaattccgtcactaaattttacgaccatggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgttttttc 21293719  T
Q  215 taatagtga 223  Q
    || ||||||    
T  21293718 tagtagtga 21293710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 32009040 - 32009088
Alignment:
Q  174 tttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||| || |||||||||||| ||||||||||| ||||||||| |||||    
T  32009040 ttttttccgtcactaattttcctcgctaattttgctttttctagtagtg 32009088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 20182177 - 20182285
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||| | |||||| ||  |  ||||||||||| || |||||||||| | |||||||||||||||||||    
T  20182177 aaatccctctctaattccgtcactaaattttgcgatcatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttactttttc 20182276  T
Q  215 taatagtga 223  Q
    || ||||||    
T  20182277 tagtagtga 20182285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 22153814 - 22153706
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||| | |||||| ||  |  ||||||||||| || |||||||||| | |||||||||||||||||||    
T  22153814 aaatccctctctaattccgtcactaaattttgcgatcatgaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttactttttc 22153715  T
Q  215 taatagtga 223  Q
    || ||||||    
T  22153714 tagtagtga 22153706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 26224460 - 26224568
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  ||||||| |||  |||||||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  26224460 aaatccctctctaattccgtcactaaattttgtgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 26224559  T
Q  215 taatagtga 223  Q
    || ||||||    
T  26224560 tagtagtga 26224568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 15448417 - 15448524
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||| ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  15448417 aaatccctctctaattccgtcattaaattttgcgattaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 15448516  T
Q  215 taatagtg 222  Q
    || |||||    
T  15448517 tagtagtg 15448524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 9892965 - 9893103
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | |||  || |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || ||    
T  9892965 agtgagggaaatttagtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtc 9893064  T
Q  185 actaattttcgtcgctaattttactttttctaatagtga 223  Q
    |||||||| | ||||||||||| ||||||||| ||||||    
T  9893065 actaatttccctcgctaattttgctttttctagtagtga 9893103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 22579403 - 22579349
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| |||||||||||||||    
T  22579403 atttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtg 22579349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 5192296 - 5192195
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||| ||  ||  |||| ||  |  ||||||||||| || |||||||||||| ||||||||||| |||||||    
T  5192296 aaatccctctctaattccgtcactaaattttacgaccaaagaatttgtgaggaatttcattttttccttcactaattttcctcgctaattttgctttttc 5192197  T
Q  215 ta 216  Q
    ||    
T  5192196 ta 5192195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 6598496 - 6598605
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  6598496 aaatccctctctaattccgtcactaaattttgcgaccaagtaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 6598595  T
Q  215 taatagtgaa 224  Q
    || |||||||    
T  6598596 tagtagtgaa 6598605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 6605550 - 6605495
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||    
T  6605550 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtga 6605495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 25398004 - 25398135
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | |||  || |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || ||    
T  25398004 agtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtc 25398103  T
Q  185 actaattttcgtcgctaattttactttttcta 216  Q
    |||||||| | ||||||||||| |||||||||    
T  25398104 actaatttccctcgctaatttttctttttcta 25398135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 28668124 - 28668239
Alignment:
Q  107 aaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaatttt 206  Q
    ||||||| |||||||| | |||||||||||  |||||||  ||| ||| |||| ||  |  |||| |||||| || ||||| |||| | |||||||||||    
T  28668124 aaattgtaaaatccctttctaattccgtcattaaattttgcgatcaaggaatttgtgaggaattttattttttccgtcactgatttccctcgctaatttt 28668223  T
Q  207 actttttctaatagtg 222  Q
    |||||||||| |||||    
T  28668224 actttttctagtagtg 28668239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 30834067 - 30833960
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||| ||||  |||||||  ||  || ||||||||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  30834067 aaatccctctctaattctgtcattaaattttgcgaccaaaaaattagtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 30833968  T
Q  215 taatagtg 222  Q
    || |||||    
T  30833967 tagtagtg 30833960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 12160901 - 12160847
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||||||  | |||||||||| | ||||||||||||||||||||| |||||    
T  12160901 atttcattttttacgtcactaatttccctcgctaattttactttttctagtagtg 12160847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 24661063 - 24661009
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  24661063 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 24661009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 28364996 - 28365050
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  28364996 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 28365050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 495681 - 495625
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    ||||||||||| || |||||||||| | | ||||||||| ||||||||| |||||||    
T  495681 atttcattttttccgtcactaatttcccttgctaattttgctttttctagtagtgaa 495625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 18492454 - 18492502
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttcta 216  Q
    ||||||||||| || |||||||||| | ||||||||||| |||||||||    
T  18492454 atttcattttttccgtcactaatttgcatcgctaattttgctttttcta 18492502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 439995 - 440102
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||| |||||||| ||  |  ||||||||||| || |||||||| ||| | |||||||||||||||||    
T  439995 aaatccctctctaattccgtcactaaattttgcgatcaagaaatttgtgaggaatttcattttttccgtcactaatattccttgctaattttactttttc 440094  T
Q  215 taatagtg 222  Q
    || |||||    
T  440095 tagtagtg 440102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 6817054 - 6817193
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | ||| ||| ||||| |||| |||||||||||  ||||||| |||  |||||||| ||  |  ||||||||||| || ||    
T  6817054 agtgagggaaatttagtgagggaaaatgtaaaatctctctctaattccgtcactaaattttgtgaccaagaaatttgtgaggaatttcattttttccgtc 6817153  T
Q  185 actaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    ||| |||||| | ||||||||| ||||||||| |||||||    
T  6817154 actgattttccttgctaattttgctttttctagtagtgaa 6817193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 3823133 - 3823270
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | |||  || |||||||||| |||||||||||  |||||||  ||  ||  |||| ||  || ||||||||||| || ||    
T  3823133 agtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgagaaatttcattttttccgtc 3823232  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | ||||||||||| |||||||||||||||    
T  3823233 actaatttccctcgctaattttgctttttctaatagtg 3823270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 16061993 - 16061937
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    ||||||||||| || |||||||||| | ||||||||||||||||||||| |||||||    
T  16061993 atttcattttttccgtcactaatttccctcgctaattttactttttctagtagtgaa 16061937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 17810328 - 17810436
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| ||||| |||||  |||||||  ||  |||||||| ||  |  ||||||||||| || |||||||||||| ||||||||||| |||||||    
T  17810328 aaatccctctctaatttcgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 17810427  T
Q  215 taatagtga 223  Q
    || ||||||    
T  17810428 tagtagtga 17810436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 25274680 - 25274740
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaaaatg 228  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||||||||    
T  25274680 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgaaaatg 25274740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 27910871 - 27910763
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  ||||||| |||  ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  27910871 aaatccctctctaattccgtcactaaattttgtgactaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 27910772  T
Q  215 taatagtga 223  Q
    || ||||||    
T  27910771 tagtagtga 27910763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 27957290 - 27957182
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  ||||||| |||  ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  27957290 aaatccctctctaattccgtcactaaattttgtgactaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 27957191  T
Q  215 taatagtga 223  Q
    || ||||||    
T  27957190 tagtagtga 27957182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 42700711 - 42700657
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || ||||| |||||| ||||||||||||||||||||| |||||    
T  42700711 atttcattttttccgtcactgattttcctcgctaattttactttttctagtagtg 42700657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 24193250 - 24193193
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtgaaa 225  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||||    
T  24193250 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgaaa 24193193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 22939343 - 22939455
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||| |||| |||||||||||  |||||||  || |||| |||| ||  |  ||||||||||| || |||||||||| | || |||||||| |||||||    
T  22939343 aaatctctctctaattccgtcactaaattttgcgacaaaggaatttgtgaggaatttcattttttccgtcactaatttccttcactaattttgctttttc 22939442  T
Q  215 taatagtgaaaat 227  Q
    || ||||||||||    
T  22939443 tagtagtgaaaat 22939455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 40289473 - 40289421
Alignment:
Q  170 ttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||| || |||||||||||| |||||||||||| |||||||| |||||    
T  40289473 ttcattttttccgtcactaattttcctcgctaattttaatttttctagtagtg 40289421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 8555358 - 8555303
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||    
T  8555358 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtga 8555303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 23752393 - 23752286
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||| |||| |||||||||||  |||||||  ||  ||| |||| ||  || ||||||||||| || |||||||| | | ||||||||||| |||||||    
T  23752393 aaatcactctctaattccgtcactaaattttgcgaccaaggaatttgtgagaaatttcattttttccgtcactaatatccctcgctaattttgctttttc 23752294  T
Q  215 taatagtg 222  Q
    ||||||||    
T  23752293 taatagtg 23752286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 31344309 - 31344182
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| || |||||||| | ||| ||| |||| ||||| |||||||||||  |||||||  ||| ||||||||  |  || |||| |||||| || ||    
T  31344309 agtgagggaattttagagagggaaaatgtgaaattcctctctaattccgtcattaaattttgcgatcaagaaatttatgagaaatttgattttttccatc 31344210  T
Q  185 actaattttcgtcgctaattttactttt 212  Q
    |||||||| | || ||||||||||||||    
T  31344209 actaatttccttctctaattttactttt 31344182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 4331061 - 4331115
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  4331061 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 4331115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 19240950 - 19241004
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  19240950 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 19241004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 19314134 - 19314188
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  19314134 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 19314188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 19488115 - 19488061
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  19488115 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 19488061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 24576078 - 24576024
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  24576078 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 24576024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 25000485 - 25000431
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | || |||||||||||||||||| |||||    
T  25000485 atttcattttttccgtcactaatttccctcactaattttactttttctagtagtg 25000431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 27869321 - 27869375
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  27869321 atttcattttttccatcactaatttccctcgctaattttgctttttctagtagtg 27869375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 14304311 - 14304359
Alignment:
Q  167 gatttcatttttcccctcactaattttcgtcgctaattttactttttct 215  Q
    |||||||||||| || |||||||||| | ||||||||||| ||||||||    
T  14304311 gatttcattttttccatcactaatttccctcgctaattttgctttttct 14304359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 18010167 - 18010067
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||| ||| |||| ||  |  ||||||||||| || ||||||||||   ||||||||||| |||||||    
T  18010167 aaatccctctctaattccgtcactaaattttgcgatcaaggaatttgtgaggaatttcattttttccgtcactaatttctctcgctaattttgctttttc 18010068  T
Q  215 t 215  Q
    |    
T  18010067 t 18010067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 24636682 - 24636790
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttact-tttt 213  Q
    |||||||||| |||||||||||  |||||||  ||| |||||||| ||  |  ||||||||||| || |||||||||| | ||| ||||||| || ||||    
T  24636682 aaatccctctctaattccgtcactaaattttgcgatcaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgctatttt 24636781  T
Q  214 ctaatagtg 222  Q
    ||| |||||    
T  24636782 ctagtagtg 24636790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 28265529 - 28265475
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||||| ||||||||||||||||||||| |||||    
T  28265529 atttcattttttccgtcactaattttcctcgctaattttactttttctagtagtg 28265475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 12045729 - 12045866
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||||| || | |||  || |||||| ||| |||||||||||  |||||||| ||  |||||||| ||  |  ||||||||||| || ||    
T  12045729 agtgagggaaatttagtgagggaaaacgtaaaatccttctctaattccgtcactaaattttacgaccaagaaatttgtgaggaatttcattttttccgtc 12045828  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | ||||||||||| ||||||||| |||||    
T  12045829 actaatttccctcgctaattttgctttttctagtagtg 12045866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 618326 - 618433
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  618326 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 618425  T
Q  215 taatagtg 222  Q
    ||||||||    
T  618426 taatagtg 618433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 4125242 - 4125187
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||||||||||||| ||||||    
T  4125242 atttcattttttccgtcactaatttccctcgctaattttactttttctagtagtga 4125187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 16631981 - 16631874
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  ||||||| |||  ||| |||| ||  |  ||||||||||| || |||||||||| | ||||||||||| |||||||    
T  16631981 aaatccctctctaattccgtcactaaattttgtgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttc 16631882  T
Q  215 taatagtg 222  Q
    || |||||    
T  16631881 tagtagtg 16631874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 24138948 - 24138841
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    ||||| |||| |||||||||||  |||||||  ||  ||| |||| ||  || ||||||||||| || |||| ||||||| ||||||||||| |||||||    
T  24138948 aaatctctctctaattccgtcactaaattttgcgaccaagcaatttgtgagaaatttcattttttccgtcaccaattttcctcgctaattttgctttttc 24138849  T
Q  215 taatagtg 222  Q
    ||||||||    
T  24138848 taatagtg 24138841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 23408982 - 23409120
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccc-t 183  Q
    ||||||| |||||||| || | |||  || |||||||||| |||||||||||  |||||||  ||| |||||||| ||  |  |||||||||||  || |    
T  23408982 agtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgatcaagaaatttgtgaggaatttcatttttttccgt 23409081  T
Q  184 cactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||  ||||||||||| ||||||||| |||||    
T  23409082 cactaatttttctcgctaattttgctttttctagtagtg 23409120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 25652719 - 25652581
Alignment:
Q  86 gtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctca 185  Q
    |||||| |||||||| || | ||| ||| |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| |  |||    
T  25652719 gtgagggaaatttagtgagggaaaatgtaaaatccctctctaattccgtcacaaaattttgcgactaaggaatttgtgaggaatttcattttttctgtca 25652620  T
Q  186 ctaattttcgtcgctaattttactttttctaatagtgaa 224  Q
    || |||| | ||||||||||| |||||||||||||||||    
T  25652619 ctgatttccctcgctaattttgctttttctaatagtgaa 25652581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 7888799 - 7888936
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    |||||||||||||||| || | |||  || |||||||||| ||| |||||||  |||||||| ||  ||| |||| ||  |  ||||||||||| || ||    
T  7888799 agtgaggaaaatttagtgagggaaaacgtaaaatccctctctaactccgtcactaaattttacgaccaaggaatttgtgaggaatttcattttttccgtc 7888898  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    | |||||| | ||||||||||| ||||||||| |||||    
T  7888899 aataatttccctcgctaattttgctttttctagtagtg 7888936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 16121946 - 16121839
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  ||||||| |||  ||| |||| ||  |  |||| |||||| || |||||||||| | ||||||||||| |||||||    
T  16121946 aaatccctctctaattccgtcactaaattttgtgaccaaggaatttgtgaggaattttattttttccgtcactaatttccctcgctaattttgctttttc 16121847  T
Q  215 taatagtg 222  Q
    || |||||    
T  16121846 tagtagtg 16121839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 17039738 - 17039631
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||||| || |||||||| |||||||    
T  17039738 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcactaattttgctttttc 17039639  T
Q  215 taatagtg 222  Q
    || |||||    
T  17039638 tagtagtg 17039631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 38837725 - 38837670
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| ||||||    
T  38837725 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtga 38837670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 23974682 - 23974576
Alignment:
Q  116 aatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttct 215  Q
    ||||||||| ||||| |||||  |||||||| || |||| |||| ||  ||||||| |||||| || |||||||||||| |  |||||||| ||||| ||    
T  23974682 aatccctctctaatttcgtcattaaattttacgacaaaggaatttgtgagagattttattttttccgtcactaattttccttcctaatttttcttttcct 23974583  T
Q  216 aatagtg 222  Q
    | |||||    
T  23974582 agtagtg 23974576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 36196479 - 36196533
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  36196479 atttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 36196533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 20959510 - 20959647
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| ||||||||||| | |||  || ||||| |||| |||||||||||  |||||||| ||  ||| |||| ||  |  |||| |||||| || ||    
T  20959510 agtgagggaaatttagagagggaaaacgtgaaatctctctctaattccgtcactaaattttacgactaaggaatttgtgaggaattttattttttccgtc 20959609  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    | | |||||| || |||||||||||||||||| |||||    
T  20959610 agtgattttcctccctaattttactttttctagtagtg 20959647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 35620393 - 35620344
Alignment:
Q  173 atttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||| || |||||||||| | ||||||||||| |||||||||||||||    
T  35620393 attttttccgtcactaatttccctcgctaattttgctttttctaatagtg 35620344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 27428149 - 27428089
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaatttt 145  Q
    ||||||||||||||||||| | |||  || |||||||||| |||||||||||  |||||||    
T  27428149 agtgaggaaaatttagagagggaaaacgtgaaatccctctctaattccgtcactaaatttt 27428089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 3774 - 3881
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || |||||||||||| ||||||||||| |||||||    
T  3774 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 3873  T
Q  215 taatagtg 222  Q
    || |||||    
T  3874 tagtagtg 3881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 202776 - 202914
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    |||||||||||||||| || | |||  || |||| ||||| |||||||||||  |||||||  ||  ||| |||| ||  |  ||||||||||| || ||    
T  202776 agtgaggaaaatttagtgagggaaaacgtaaaattcctctctaattccgtcactaaattttgcgaccaaggaatttgtgagcaatttcattttttccgtc 202875  T
Q  185 actaattttcgtcgctaattttactttttctaatagtga 223  Q
    |||||||| | ||||||||||| ||||||||| ||||||    
T  202876 actaatttccctcgctaatttttctttttctagtagtga 202914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 84305 - 84442
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctc 184  Q
    ||||||| |||||| | || | ||| ||| |||||||||| |||||||||||  ||||||| |||  | |||||| ||  |  ||||||||||| || ||    
T  84305 agtgagggaaattttgtgagggaaaatgtgaaatccctctctaattccgtcactaaattttgtgaccatgaaatttgtgaggaatttcattttttccgtc 84404  T
Q  185 actaattttcgtcgctaattttactttttctaatagtg 222  Q
    |||||||| | | ||||||||| ||||||||| |||||    
T  84405 actaatttcccttgctaattttgctttttctagtagtg 84442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 8217 - 8116
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||| |  ||||||||||| || ||| |||||| | ||||||||||| |||||||    
T  8217 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgttaggaatttcattttttccgtcattaatttccctcgctaattttgctttttc 8118  T
Q  215 ta 216  Q
    ||    
T  8117 ta 8116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 21949 - 21848
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||| |  ||||||||||| || ||| |||||| | ||||||||||| |||||||    
T  21949 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgttaggaatttcattttttccgtcattaatttccctcgctaattttgctttttc 21850  T
Q  215 ta 216  Q
    ||    
T  21849 ta 21848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 7541 - 7589
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttcta 216  Q
    ||||||||||| || |||||||||||| ||| |||||||||||||||||    
T  7541 atttcattttttccgtcactaattttcctcgttaattttactttttcta 7589  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 173531 - 173585
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtga 223  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||||||||||    
T  173531 atttcattttttccgtcactaatttcc-tcgctaattttgctttttctaatagtga 173585  T

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Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 26568 - 26622
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| |||| |||||||| ||||||||| |||||    
T  26568 atttcattttttccgtcactaatttccgtcactaattttgctttttctagtagtg 26622  T

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Target: scaffold0062 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 44002 - 44056
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  44002 atttcattttttccatcactaatttccctcgctaatttttctttttctagtagtg 44056  T

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Target: scaffold0023 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 39757 - 39703
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttctaatagtg 222  Q
    ||||||||||| || |||||||||| | ||||||||||| ||||||||| |||||    
T  39757 atttcattttttccatcactaatttccctcgctaattttgctttttctagtagtg 39703  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 22243 - 22353
Alignment:
Q  115 aaatccctctttaattccgtcaacaaattttatgataaagaaattagttggagatttcatttttcccctcactaattttcgtcgctaattttactttttc 214  Q
    |||||||||| |||||||||||  |||||||  ||  ||| |||| ||  |  |||||||||||  | |||||||||| | ||||||||||| |||||||    
T  22243 aaatccctctctaattccgtcactaaattttgcgactaaggaatttgtgaggaatttcatttttttcgtcactaatttccctcgctaattttgctttttc 22342  T
Q  215 taatagtgaaa 225  Q
    || ||||||||    
T  22343 tagtagtgaaa 22353  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 10717 - 10669
Alignment:
Q  168 atttcatttttcccctcactaattttcgtcgctaattttactttttcta 216  Q
    ||||||||||| || |||||||||| | ||||||||||| |||||||||    
T  10717 atttcattttttccgtcactaatttccctcgctaattttgctttttcta 10669  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 112330 - 112390
Alignment:
Q  85 agtgaggaaaatttagagatgcaaattgttaaatccctctttaattccgtcaacaaatttt 145  Q
    ||||||||||||| ||||| | |||  ||||||||||||| |||||||||||  |||||||    
T  112330 agtgaggaaaattcagagaggaaaaacgttaaatccctctctaattccgtcattaaatttt 112390  T

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