View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_low_11 (Length: 329)
Name: NF11337_low_11
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 17356390 - 17356072
Alignment:
| Q |
1 |
cataagtgtaaaataagttcggtccacttattaaaataggtgccgctaatttatcacttgtatctatctcattaaatgaaaggtgaatggaacttgataa |
100 |
Q |
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| T |
17356390 |
cataagtgtaagattagtgtggtccacttattaaaataggtcccactaatttatcacttgtatctatctcatgaaatgaatggtgaatggaacttgataa |
17356291 |
T |
|
| Q |
101 |
atggtataaatccaaactcagaactaaacctgattctttttcgagcatagttatttagggttgtaatgaatgatgattaattttaaataattaactatta |
200 |
Q |
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| T |
17356290 |
atggtataaattcagacccaaaactaaacctgattcttttctgagcatagttatttagggttgtaatggatgatgattaattttaaataattaactatta |
17356191 |
T |
|
| Q |
201 |
tccatattaagtgcaactctttatcactgtttcgagattgaagcatctcaagatgagtggttctttgtctcaatgatattaatgattctatgctgcttct |
300 |
Q |
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| T |
17356190 |
tccatattaattgcaactgtttatcactgtttcgagattgaagcatctcaagatgagtggttctttgtctcaatgatattaatgattctatgttgcttct |
17356091 |
T |
|
| Q |
301 |
tttggttggatgatctgtg |
319 |
Q |
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| T |
17356090 |
tttggttggatgatctgtg |
17356072 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 23746137 - 23746088
Alignment:
| Q |
21 |
ggtccacttattaaaataggtgccgctaatttatcacttgtatctatctc |
70 |
Q |
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| T |
23746137 |
ggtccacttattaaaatgggtcccactaatctatcacttgtgtctatctc |
23746088 |
T |
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