View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11337_low_13 (Length: 309)
Name: NF11337_low_13
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 24053736 - 24053450
Alignment:
| Q |
1 |
aataacaattgaaagtagatactagtattgattacgtaccattcaaatgttggatggcaaaaatggatccttgctcaaaatttgaagtccttcttaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24053736 |
aataacaattgaaagtagatactagtattgattacgtaccattcaaatgttggatggcaaaaatggatccttgctcaaaatttgaagtccttcttaaata |
24053637 |
T |
|
| Q |
101 |
attcgtgtaatttcttcttttggattgaaggttgatactttttctttaagtgataattggaggcagttttggtattgattattatcattcagttattgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24053636 |
attcgtgtaatttcttcttttggattgaaggttgatactttttctttaagtgataattggaggcagttttggtattga---ttatcattcagttattgga |
24053540 |
T |
|
| Q |
201 |
tagcaaatatg---------tccaaatttgaagtacttcttaagtaattagccgtaatttcttctctcgaattaaaggtgggtaattttt |
281 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24053539 |
tagcaaatatggatccttactccaaatttgaagtacttcttaagtaattagccgtaatttcttctctcgaattaaaggtgggtaattttt |
24053450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 36485288 - 36485180
Alignment:
| Q |
40 |
cattcaaatgttggatggcaaaaatggatccttgctcaaaatttgaagtccttcttaaataatt-cgtgtaatttcttcttttggattgaaggttgatac |
138 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||| ||||||| | ||| |||||||||| |||| | |||||||||||| ||| |||||| || ||||| |
|
|
| T |
36485288 |
cattcaattattggatgacaaaaatggatccttactcaaaaatcgaaatccttcttaagaaattaggggtaatttcttctcttgaattgaaagtagatac |
36485189 |
T |
|
| Q |
139 |
tttttcttt |
147 |
Q |
| |
|
||||||||| |
|
|
| T |
36485188 |
tttttcttt |
36485180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 24053544 - 24053434
Alignment:
| Q |
50 |
ttggatggcaaaaatggatccttgctcaaaatttgaagtccttcttaaataattcg-tgtaatttcttcttttggattgaaggttgatactttttcttta |
148 |
Q |
| |
|
|||||| ||||| |||||||||| ||| ||||||||||| |||||||| ||||| | |||||||||||| | | ||| ||||| | || |||||||||| |
|
|
| T |
24053544 |
ttggatagcaaatatggatccttactccaaatttgaagtacttcttaagtaattagccgtaatttcttctctcgaattaaaggtgggtaatttttcttta |
24053445 |
T |
|
| Q |
149 |
agtgataattg |
159 |
Q |
| |
|
|||| ||||| |
|
|
| T |
24053444 |
ggtgacaattg |
24053434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 36493025 - 36492930
Alignment:
| Q |
51 |
tggatggcaaaaatggatccttgctcaaaatttgaagtccttcttaaataattcgtgtaatttcttcttttggattgaaggttgatactttttcttt |
147 |
Q |
| |
|
||||||||||| ||| |||| | ||||||| ||||| || ||||||| |||| | |||||||||||| ||| |||||| || ||||| |||||||| |
|
|
| T |
36493025 |
tggatggcaaatatgcatccctactcaaaaattgaaatcgttcttaagaaattag-gtaatttcttctcttgaattgaaagtagataccttttcttt |
36492930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University