View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11337_low_14 (Length: 303)

Name: NF11337_low_14
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11337_low_14
NF11337_low_14
[»] chr8 (4 HSPs)
chr8 (19-276)||(7942809-7943066)
chr8 (130-170)||(1502689-1502729)
chr8 (130-170)||(39691133-39691173)
chr8 (130-170)||(40914590-40914630)
[»] chr7 (3 HSPs)
chr7 (129-185)||(22688955-22689011)
chr7 (133-170)||(40998401-40998438)
chr7 (130-174)||(19914950-19914994)
[»] chr2 (1 HSPs)
chr2 (130-170)||(40347966-40348006)
[»] chr3 (1 HSPs)
chr3 (134-180)||(43589186-43589232)
[»] chr6 (2 HSPs)
chr6 (129-174)||(12132573-12132618)
chr6 (129-174)||(12735496-12735541)
[»] scaffold0268 (1 HSPs)
scaffold0268 (140-180)||(20257-20297)
[»] chr4 (1 HSPs)
chr4 (130-174)||(41370183-41370227)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 7942809 - 7943066
Alignment:
Q  19 aagaagcatataaagtgtatttgtctcatggacacttgtttgtaattcgtgggtcttaccaacgaatgcttcagatactctttaacgattttaaattaag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  |||||| ||||||||| |||||||||||||||||||||||     
T  7942809 aagaagcatataaagtgtatttgtctcatggacacttgtttgtaattcttggatcttgtcaacgagtgcttcagacactctttaacgattttaaattaaa 7942908  T
Q  119 aaaatatttcattcaatttttaatgcattaaatacacaaatattcataaaaacttaacattttagatcaataaaaactaattcgaaggacattcgttatc 218  Q
    ||| ||||  ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||     
T  7942909 aaagtattatatttaatttttaatgcattaaatacataaatattcataaaaacttaacattttagatcattaaaaactaattcgaaggacactcgttatt 7943008  T
Q  219 attttctttaacaaaatcttttgtattcatttttacaccacacttaactatttataat 276  Q
    |||||| ||| ||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  7943009 attttccttatcaaaatcctttgtattcttttttacaccacacttatctatttataat 7943066  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 1502729 - 1502689
Alignment:
Q  130 ttcaatttttaatgcattaaatacacaaatattcataaaaa 170  Q
    ||||||||| |||||||||||||| ||||| ||||||||||    
T  1502729 ttcaattttcaatgcattaaatacgcaaattttcataaaaa 1502689  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 39691173 - 39691133
Alignment:
Q  130 ttcaatttttaatgcattaaatacacaaatattcataaaaa 170  Q
    ||||||||| |||||||| ||||||||||| ||||||||||    
T  39691173 ttcaattttcaatgcattgaatacacaaattttcataaaaa 39691133  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 40914630 - 40914590
Alignment:
Q  130 ttcaatttttaatgcattaaatacacaaatattcataaaaa 170  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  40914630 ttcaattttcaatgcattaaattcacaaattttcataaaaa 40914590  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 22689011 - 22688955
Alignment:
Q  129 attcaatttttaatgcattaaatacacaaatattcataaaaacttaacattttagat 185  Q
    ||||||||||||||||||||||||||||| |  ||||||||| |||  |||||||||    
T  22689011 attcaatttttaatgcattaaatacacaagttgtcataaaaaattactattttagat 22688955  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 40998438 - 40998401
Alignment:
Q  133 aatttttaatgcattaaatacacaaatattcataaaaa 170  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  40998438 aatttttaatgtattaaatacacaaattttcataaaaa 40998401  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 19914994 - 19914950
Alignment:
Q  130 ttcaatttttaatgcattaaatacacaaatattcataaaaactta 174  Q
    ||||||||| ||| || ||||| ||||||||||||||||||||||    
T  19914994 ttcaattttcaatacaataaatgcacaaatattcataaaaactta 19914950  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 40348006 - 40347966
Alignment:
Q  130 ttcaatttttaatgcattaaatacacaaatattcataaaaa 170  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  40348006 ttcaatttttaatgtattaaatacacaaattttcataaaaa 40347966  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 43589232 - 43589186
Alignment:
Q  134 atttttaatgcattaaatacacaaatattcataaaaacttaacattt 180  Q
    ||||||||||||||||| |||||||| || ||||||||||| |||||    
T  43589232 atttttaatgcattaaaaacacaaatttttataaaaacttaccattt 43589186  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 12132573 - 12132618
Alignment:
Q  129 attcaatttttaatgcattaaatacacaaatattcataaaaactta 174  Q
    |||||||||| |||||||| ||||||||||| |||||| |||||||    
T  12132573 attcaattttcaatgcatttaatacacaaattttcatagaaactta 12132618  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 12735541 - 12735496
Alignment:
Q  129 attcaatttttaatgcattaaatacacaaatattcataaaaactta 174  Q
    ||||||||||  || |||||||||||||||| ||||||||||||||    
T  12735541 attcaattttcgatacattaaatacacaaattttcataaaaactta 12735496  T

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Target: scaffold0268 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 20297 - 20257
Alignment:
Q  140 aatgcattaaatacacaaatattcataaaaacttaacattt 180  Q
    |||||||||||||||||| | |||||||||||||| |||||    
T  20297 aatgcattaaatacacaacttttcataaaaacttatcattt 20257  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 41370227 - 41370183
Alignment:
Q  130 ttcaatttttaatgcattaaatacacaaatattcataaaaactta 174  Q
    ||||||||| |||||||| | ||||||||| ||||||||||||||    
T  41370227 ttcaattttcaatgcattgattacacaaattttcataaaaactta 41370183  T

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