View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_low_18 (Length: 240)
Name: NF11337_low_18
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17356479 - 17356701
Alignment:
| Q |
1 |
catgagtaagtaaatataaaaatgtagtataaataaaggatgacaaaaaagtcatcttcatttaataatgaaatctcagaaaattttgcaacaaaattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17356479 |
catgagtaagtaaatataaaaatgtagtataaataaaggatgacaaaaaagtcatcttcatttaataatgaaatctcagaaaattttgcaacaaaattca |
17356578 |
T |
|
| Q |
101 |
aaacaccaacatcatctaatgattgaattaaatctctaaacattctaataaacagaatttgagacatcattaaaaactacataaacttttgctgcaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17356579 |
aaacaccaacatcatctaatgattgaattaaatctctaaatattctaataaacagaatttgagacatcattaaaaactacataaacttttgctgcaacta |
17356678 |
T |
|
| Q |
201 |
ataacaacactgacatcattcat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
17356679 |
ataacaacactgacatcattcat |
17356701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 9400093 - 9400126
Alignment:
| Q |
56 |
cttcatttaataatgaaatctcagaaaattttgc |
89 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
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|
| T |
9400093 |
cttcatttaacaatgaaatctcagaaaattttgc |
9400126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 89
Target Start/End: Original strand, 9409573 - 9409602
Alignment:
| Q |
60 |
atttaataatgaaatctcagaaaattttgc |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
9409573 |
atttaataatgaaatctcagaaaattttgc |
9409602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 9418656 - 9418689
Alignment:
| Q |
56 |
cttcatttaataatgaaatctcagaaaattttgc |
89 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
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|
| T |
9418656 |
cttcatttaacaatgaaatctcagaaaattttgc |
9418689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 3705972 - 3705907
Alignment:
| Q |
139 |
aacattctaataaacagaatttgagacatcattaaaaactacataaacttttgctgcaactaataa |
204 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||| |||||||||| ||||| ||| |||||| |
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| T |
3705972 |
aacattccaataaacagaagttgagacattattaaaagttacataaactgttgctacaattaataa |
3705907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 3703033 - 3702988
Alignment:
| Q |
147 |
aataaacagaatttgagacatcattaaaaactacataaacttttgc |
192 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |||| |
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|
| T |
3703033 |
aataaacagaatttgagacattattaaaagttacataaactgttgc |
3702988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 4431473 - 4431519
Alignment:
| Q |
40 |
atgacaaaaaagtcatcttcatttaataatgaaatctcagaaaattttgc |
89 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
4431473 |
atgacaaaaaagtcacc---atttaataatgaaatctcagaaaattttgc |
4431519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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