View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_low_2 (Length: 557)
Name: NF11337_low_2
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 21 - 547
Target Start/End: Original strand, 54219893 - 54220416
Alignment:
| Q |
21 |
atccttgcctttcaccttcgtttttctctctccgccaccaccagcggaggctagagaaagacgcaagaaaaagaacattcccattgatgattatatcact |
120 |
Q |
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| T |
54219893 |
atccttgcctttcaccttcgtttttctctctccgccaccaccagcggaggctagagaaagacgcaagaaaaagaacattcccattgatgattatatcact |
54219992 |
T |
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| Q |
121 |
tcccgtatttccttctttactcaacattcacatttgctgttaaactatcttctatatcaaattattttctattttcacttttcttctgctctgtataaac |
220 |
Q |
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| T |
54219993 |
tcccgtatttccttctttactcaacattcacattttctgttaaactatcttcaatatcaaattattttctattttcacttttcttctgctctgtataaac |
54220092 |
T |
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| Q |
221 |
taattcagaaacttgtgatgtttgattcagctgatggattaaaatactatgattttcttgagggaaaaggtccaatagctgaaaaaggatcaactgttca |
320 |
Q |
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| T |
54220093 |
taattcagaaacttgtgatgtttgattcagctgatggattaaaatactatgattttcttgagggaaaaggtccaatagctgaaaaaggatcaactgttca |
54220192 |
T |
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| Q |
321 |
ggtttgtcatcttttggaaattaaaggaaaatatgttattcatttcttctggatttgttattatttactcttcatttcatattgttcttgttgacaggtg |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54220193 |
ggtttgtcatcttttggaaattaaaggaaaatatgttattcatttcttctggatttgttattatttactcttcatttca---tgttcttgttgacaggtg |
54220289 |
T |
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| Q |
421 |
cactttgattgtttatatcgcggaattacagctgtttcaagtcgagaatctaaactcctagctggaaatcgtgttatagcccaggttccaataatttgcc |
520 |
Q |
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| T |
54220290 |
cactttgattgtttatatcgcggaattacagctgtttcaagtcgagaatctaaactcctagctggaaatcgtgttatagcccaggttccaataatttgcc |
54220389 |
T |
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| Q |
521 |
tatttggtttttctgtgcatgtctgtg |
547 |
Q |
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| T |
54220390 |
tatttggtttttctgtgcatgtgtgtg |
54220416 |
T |
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