View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11337_low_20 (Length: 228)
Name: NF11337_low_20
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 40452520 - 40452705
Alignment:
| Q |
25 |
cagtataatcaaacacacaatattaacgaactaccgaaccccttaacaaattggccaaaacaggttgtcaaaaactctatatttgtccttcaatttagtc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40452520 |
cagtataatcaaacacacaatattaacgaactaccgaaccccttaacaaattggccaaaacaggttgtcaaaaactctatatttgtccttcaatttagtc |
40452619 |
T |
|
| Q |
125 |
cattacttgttaacttacgcaacgaggctcgttaatcaaaatacacaccaacttaatccttttgcaatcaaaattcacctcatatg |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40452620 |
cattacttgttaacttatgcaacgaggctcgttaatcaaaatacacaccaacttaatacttttgcaatcaaaattcacctcatatg |
40452705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University