View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_low_5 (Length: 485)
Name: NF11337_low_5
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 2 - 477
Target Start/End: Complemental strand, 26374630 - 26374155
Alignment:
| Q |
2 |
ctgatgaaaccgagattactccatccgtagacaagaacgacgtagacaagaaagacgctcctcaactcagtttggtggttagtagttataaaaggactct |
101 |
Q |
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|||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26374630 |
ctgaggaaaccgagaatactccatccgtagacaagaaagacgtagacaagaaagacgctcctcaactcagtttggaggttagtagttataaaaggactct |
26374531 |
T |
|
| Q |
102 |
atcaggtggtcttcagagtccaagaacgaccgaggtgcccaagacttctatattgcaaagaatcaattccaagaagggttcaaagtcctaccaattggga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26374530 |
atcaggtggtcttcagagtccaagaacgaccgaggtgcccaagacttctatattgcaaagaatcaattccaagaagggttcaaagtcctaccaattggga |
26374431 |
T |
|
| Q |
202 |
catagactttcgcgtaaatggtcaactggagctggtccgagaatcgggtgtgttgctgattaccctgtggagcttagactacaggccttggaaatgcttc |
301 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26374430 |
catagactttcgcgtaaatggtcaactggagctggtccgagaatcgggtgtgttgctgattaccctgtggagcttagactacaggccttggaaatgcttc |
26374331 |
T |
|
| Q |
302 |
acctttctccgaagcttccaccctctcccatgtcatacatgtcaggtgctcttatttcgcctgtcgtttctccaacgcccaataccgtgcacatttacaa |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26374330 |
acctttctccgaagcttccaccctctcccatgtcatacatgtcaggtgctcttatttcgcctgtcgtttctccaacgcctaataccgtgcacatttacaa |
26374231 |
T |
|
| Q |
402 |
tgatgagagtgcacatttaaaatgatgagtttggttaattgaattactgctgatattagtattatgttttcatctc |
477 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26374230 |
tgatgagagtgcacatttaaaatgatgagtttggttaattgaattactgctgatattagtattatgttttcatctc |
26374155 |
T |
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