View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11337_low_6 (Length: 410)
Name: NF11337_low_6
Description: NF11337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11337_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 394
Target Start/End: Original strand, 49985528 - 49985908
Alignment:
| Q |
14 |
agattatgttgatagtgagacttcagattcagaaaagtgaagttggttctaacgatgaatgtgtgactgcaaattttgtaggcgttaggccaaaaatctg |
113 |
Q |
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| T |
49985528 |
agattatgttgatagtgagacttcagattcagaaaagtgaagttggttctaacgatgaatgtgtgactgcaaattttgtaggcattaggcccaaaatccg |
49985627 |
T |
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| Q |
114 |
ttccctttggttctggcttcgttaagttacaagacatgaaagtttctaattcacaatttatgtacgtattacttaatttttgtagtgtttgctaagaagc |
213 |
Q |
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| T |
49985628 |
ttccctttggttctggcttcgttaagttacaagacacgaaagtttctaattcacaatttatgta----ttacttaatttttgtagtgtttgctaagaagc |
49985723 |
T |
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| Q |
214 |
atttacactaaaatgtacaccggacacaacgccaacaagtatacactagtaacgatttgtgaaaatagaagtgaatgtatgtgattacaagcgacattcc |
313 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49985724 |
atttacactaaaatgtacaccggatacgacgccaacaagtatacactagtaacgatttgtgaaaatagaagtgattgtatgtgattacaagcgacattcg |
49985823 |
T |
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| Q |
314 |
gatatgccttttatatgcattttctggtgctgcataat----gtgtttgcataatcagtttggtttgatgtatgggttaaaatac |
394 |
Q |
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| T |
49985824 |
gatatgccttttatatgcattttctggtgctgcataatgtacgtgtttgcataatcagtttggtttgatgtatgggttaaaatac |
49985908 |
T |
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