View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11338_high_11 (Length: 327)
Name: NF11338_high_11
Description: NF11338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11338_high_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 180 - 327
Target Start/End: Complemental strand, 43317919 - 43317772
Alignment:
| Q |
180 |
tatttcagaacatcaaatatgacattgacaatattgtaaacatcattgacaaagtgataagtggaagtgattagatgtaaactcttatgactgagcaagc |
279 |
Q |
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| T |
43317919 |
tatttcagaacgtcgaatatgacattgacaatattgtaaacatcattgacaaagtgataagtggaagtgattagatataaactcttatgactgagcaagc |
43317820 |
T |
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| Q |
280 |
aactcggacaattttggtaggtatttagaacattttgaaacttatttt |
327 |
Q |
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| T |
43317819 |
aactcggacaattttggtaggtatttagaacattttgaaacttatttt |
43317772 |
T |
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Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 43318130 - 43317994
Alignment:
| Q |
14 |
gaatacagtgaagaatgggcgagctgaacattcggtattactatatgcacccacgcaattcaataccaacaccccaacaaattaagtattgctaccaaca |
113 |
Q |
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| T |
43318130 |
gaatacagtgaagaatgcgcgagctgaacattcggtattactatatgcacccacgcaattcaataccaacaccccaacaaattaagtattgctaccaaca |
43318031 |
T |
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| Q |
114 |
ccatgaaaaatactactcacacgccttacaagcatta |
150 |
Q |
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| T |
43318030 |
ccatgaaaaatactactcacacgccttacaagtatta |
43317994 |
T |
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