View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11338_high_12 (Length: 319)

Name: NF11338_high_12
Description: NF11338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11338_high_12
NF11338_high_12
[»] chr7 (1 HSPs)
chr7 (1-308)||(24906997-24907304)
[»] chr1 (2 HSPs)
chr1 (31-304)||(31302245-31302514)
chr1 (76-144)||(25244983-25245051)
[»] chr6 (1 HSPs)
chr6 (76-154)||(26857966-26858044)
[»] chr3 (3 HSPs)
chr3 (76-134)||(9129510-9129568)
chr3 (76-134)||(9137617-9137675)
chr3 (76-130)||(34365439-34365493)
[»] chr5 (1 HSPs)
chr5 (78-154)||(8933907-8933983)
[»] scaffold0102 (1 HSPs)
scaffold0102 (76-154)||(14385-14463)
[»] chr4 (1 HSPs)
chr4 (77-159)||(41189587-41189669)
[»] chr2 (1 HSPs)
chr2 (76-154)||(17893953-17894031)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 24907304 - 24906997
Alignment:
Q  1 ataacaatgagctcaaggaaaatgtggaaattcaaataaccaaccgaggtataaaatgaaagtaacgttacagaagggtggcaatgtgatccaccaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24907304 ataacaatgagctcaaggaaaatgtggaaattcaaataaccaaccgaggtataaaatgaaagtaacgttacataagggtggcaatgtgatccaccaaatc 24907205  T
Q  101 cataatcatccaatccctccagtacaaaatccatctagtccatctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcgactctaga 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24907204 cataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcaactctaga 24907105  T
Q  201 ttataaatgggacgtttaaccttgccctttcgtccataattttcttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907104 ttataaatgggacgtttaaccttgccctttcgtccataattttcttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttct 24907005  T
Q  301 attttcat 308  Q
    ||||||||    
T  24907004 attttcat 24906997  T

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Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 31 - 304
Target Start/End: Original strand, 31302245 - 31302514
Alignment:
Q  31 ttcaaataaccaaccgaggtataaaatgaaagtaacgttacagaagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaat 130  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  31302245 ttcaaataaccaactgaggtataaaattaaagtaacgttacataagggtggcaatgtgatccaccaaatccatatccatccaatccctcgagtacaaaat 31302344  T
Q  131 ccatctagtccatctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgcccttt 230  Q
    ||||||| | ||||||||||||||||||||  ||||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31302345 ccatctaattcatctaccaaacaatttttc--cttcttat--tagaaatgtcgttacatgcgactctagattataaatgggacgtttcaccttgcccttt 31302440  T
Q  231 cgtccataattttcttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttctattt 304  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||    
T  31302441 cgtccataattttcttcttcttattagaaacgtattccacagcctctctctcagccaaatgcttacttctattt 31302514  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 25244983 - 25245051
Alignment:
Q  76 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctagtccatc 144  Q
    |||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| | ||||||    
T  25244983 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatcaaatccatc 25245051  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 26857966 - 26858044
Alignment:
Q  76 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctagtccatctaccaaacaa 154  Q
    |||||||||| |||||||  | ||||||| ||||||||||| |||| ||||||||||||| | |||||||| |||||||    
T  26857966 gggtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatctatcaaacaa 26858044  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 9129568 - 9129510
Alignment:
Q  76 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccat 134  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  9129568 gggtggcaaagtgatccaccaaatccatattcatccattccatccgctacaaaatccat 9129510  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 9137675 - 9137617
Alignment:
Q  76 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccat 134  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  9137675 gggtggcaaagtgatccaccaaatccatattcatccattccatccgctacaaaatccat 9137617  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 34365439 - 34365493
Alignment:
Q  76 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaat 130  Q
    |||||||||| |||||||||||||| |||| |||||||||| | || ||||||||    
T  34365439 gggtggcaatttgatccaccaaatctataaccatccaatccattcactacaaaat 34365493  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 8933983 - 8933907
Alignment:
Q  78 gtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctagtccatctaccaaacaa 154  Q
    |||||||| |||||||  | ||||||| ||||||||||| |||| ||||||||||||| | |||||| | |||||||    
T  8933983 gtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatccatcaaacaa 8933907  T

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Target: scaffold0102 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 14463 - 14385
Alignment:
Q  76 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctagtccatctaccaaacaa 154  Q
    |||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| | |||||| | |||||||    
T  14463 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 14385  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 41189587 - 41189669
Alignment:
Q  77 ggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctagtccatctaccaaacaattttt 159  Q
    ||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| | |||||| | ||||||| ||||    
T  41189587 ggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaaatttt 41189669  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 17893953 - 17894031
Alignment:
Q  76 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctagtccatctaccaaacaa 154  Q
    ||||||||||  |||||| ||||||||||  |||||||||| ||||  | || ||||||| | ||||||||||||||||    
T  17893953 gggtggcaataggatccatcaaatccatatacatccaatccatccaccataatatccatccaatccatctaccaaacaa 17894031  T

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