View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11338_high_13 (Length: 313)
Name: NF11338_high_13
Description: NF11338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11338_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 35849978 - 35850278
Alignment:
| Q |
1 |
cataaaacgttcagcacgaaaggatcgattgcttcctataaatatgttgaacgccatgcaacaggttgaggagattattaactatgcagatcatgaatat |
100 |
Q |
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| T |
35849978 |
cataaaacggtcagcacaaaaggatcgattgcttcctataaatatgttgaacgccatgcaacaggttgaggagattattaattatgcagatcatgaatat |
35850077 |
T |
|
| Q |
101 |
tctaaatcttttgatttgacaacatgggatcatggacttgttataaatatgtgtatgtaggaattaaataaagttgagcacacatgctattacctgacca |
200 |
Q |
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| T |
35850078 |
tctaaatcttttgatttgacaacatgggatcatggacttgttataaatatgtgtatgtaggaattaaataaagttgagcacacatgccattacctgacca |
35850177 |
T |
|
| Q |
201 |
attatccctaaacacatctatgtgttgactattacctattggctacttgatgtcctgcttcataccaaacatagcttcatatttgttacacatgactcga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850178 |
attatccctaaacacatctatgtgttgactattacctattggcta----aagtcctgcttcataccaaacatagcttcatatttgttacacatgactcga |
35850273 |
T |
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| Q |
301 |
attgt |
305 |
Q |
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||||| |
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| T |
35850274 |
attgt |
35850278 |
T |
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