View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11338_high_1_N (Length: 651)
Name: NF11338_high_1_N
Description: NF11338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11338_high_1_N |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 32 - 430
Target Start/End: Original strand, 32706698 - 32707096
Alignment:
| Q |
32 |
attagctccttcctctttattatatttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaat |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32706698 |
attagctccttcctctttattatatttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaat |
32706797 |
T |
|
| Q |
132 |
gcgtcgatttcaggtaacgacgattacaaattctactttccaagacacaggtatagcagctataggcgtggagcatcaatttcacttccaaatatcccag |
231 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32706798 |
gcgtcgatttcagctaacgacgattacaaattctactttccaagacacaggcatagcagctataggcgtggtgcatcaatttcacttccaaatatcccag |
32706897 |
T |
|
| Q |
232 |
atatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32706898 |
atatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaa |
32706997 |
T |
|
| Q |
332 |
attgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgctttgacatctgctgctgtacaatataatgattgatat |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
32706998 |
attgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgcttttacatctgctgctgcacaatataatgattgatat |
32707096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 32749254 - 32749306
Alignment:
| Q |
56 |
tttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcact |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
32749254 |
tttggatttctatgtttgtagagattgaaaattggtactatgctgctttcact |
32749306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 151 - 546
Target Start/End: Original strand, 3001615 - 3002011
Alignment:
| Q |
151 |
acgattacaaattctactttccaagacacaggtatagcagctataggcgtggagcatcaatttcacttccaaatatcccagatatccctttaagcatggt |
250 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3001615 |
acgattacaaattctactctccaagacacaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggt |
3001714 |
T |
|
| Q |
251 |
gttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaaattg-tgccgctacggaaa |
349 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
3001715 |
gttgcctcattttggaaaatgaagtgctgctttcaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgccactacggaaa |
3001814 |
T |
|
| Q |
350 |
tattttactagcatgcgttggttatgaatatgaatataatgtgctttgacatctgctgctgtacaatataatgattgatatctaatgatatattgtacta |
449 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
3001815 |
tattttactagcatgtgttggttatgaatatgaatataatgtgctttggcatctgctgctgcacaatataatgattg-tatgtaatgatatattatacta |
3001913 |
T |
|
| Q |
450 |
aatgggatagtaatactatttaaaggttgcataaacggtaattgctgcagtttcttgtccaaactttatgac-attgacttgtttttacagagttatc |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
3001914 |
aatgggatagtaatactatttaaaggttgcataaatggtaattgctgcagtttcttgtccaaactttatgacttttgacttgtttttacatagttatc |
3002011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 3001217 - 3001291
Alignment:
| Q |
58 |
tggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaatg |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
3001217 |
tggatttctttgtttgtagatattgaaaattggtactgtgctgttttcactgttactttttcctataccagaatg |
3001291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 562 - 631
Target Start/End: Original strand, 16895055 - 16895126
Alignment:
| Q |
562 |
taaacccagttgaatcatgcagtacacacatt--gggtctaaaatgttttctcttccccaaaaggaaaagta |
631 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16895055 |
taaacccaattgaatcatgcagtatacatattatgggtctaaaatgttttctcttccccaaagggaaaagta |
16895126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University