View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11338_high_2 (Length: 464)
Name: NF11338_high_2
Description: NF11338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11338_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 4761788 - 4761328
Alignment:
| Q |
1 |
taaaataccttaaaagttaaaatcaaacacgtaacatgtgcagaaaaacttgagtaaattaagaaacctctctatttcatgatgttgaagatagaaaaat |
100 |
Q |
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| T |
4761788 |
taaaataccttaaaagttaaaatcaaacacgtaacatgtgcagaaaaacatgagtaaattaagaaacctctctatttcatgatgttgaagatagaaaaat |
4761689 |
T |
|
| Q |
101 |
aataataaaatgaaactttacatttatagggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaa |
200 |
Q |
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| T |
4761688 |
aataataaaatgaaactttacatttatagggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaa |
4761589 |
T |
|
| Q |
201 |
tgatgttgtcttgtcttgtggtaacgatttcaattgcgtgtatgaatatgtccttttcatagaacaattgggtataaacgcaaccttaattataatgtaa |
300 |
Q |
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| T |
4761588 |
tgatgttgtcttgtcttgtggtaacgatttcaattgcgtgtatga--atgtccttttcattgaacaattgggtataaacgcaaccttaattataatgtaa |
4761491 |
T |
|
| Q |
301 |
ttattaattattatggtttaccaacaaaccccgcctattgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattg |
400 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761490 |
ttattaattattatggtttaccaataaaccctgcctattgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattg |
4761391 |
T |
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| Q |
401 |
ttaacaaatctatgcatggtaagatataataagaaaaatggttctggttccacttagtcatga |
463 |
Q |
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| T |
4761390 |
ttaacaaatctatgcatggtaagatataataagaaaaatgattctggttccacttagtcatga |
4761328 |
T |
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