View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11338_high_7 (Length: 373)

Name: NF11338_high_7
Description: NF11338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11338_high_7
NF11338_high_7
[»] chr1 (1 HSPs)
chr1 (33-350)||(12309225-12309536)
[»] chr4 (2 HSPs)
chr4 (66-156)||(34077494-34077584)
chr4 (283-350)||(34077716-34077783)
[»] chr5 (1 HSPs)
chr5 (76-156)||(27107714-27107794)
[»] chr3 (1 HSPs)
chr3 (265-350)||(44633005-44633090)
[»] chr8 (1 HSPs)
chr8 (96-155)||(37601884-37601943)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 33 - 350
Target Start/End: Original strand, 12309225 - 12309536
Alignment:
Q  33 ttttcaatgcttgatattgattttaaccatacctattttttaacagatagatgaaaatgtacgaagggaaattataaatcatagatcactgaggcatccc 132  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12309225 ttttcaatgtttgatattgattt-aaccatacctattttttaacagatagatgaaaatgtacaaagggaaattataaatcatagatcactgaggcatccc 12309323  T
Q  133 aatattgtcaggttcaaagaggttcgtactctatagacgtccagtgtcttctaagctctaagctccaagcttatagatctatctata--ctaatccgtac 230  Q
    ||||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||       |||||||||| ||||||||||   ||||||||||    
T  12309324 aatattgtcaggttcaaggaggttcgtactctgttgacgtccggtgtcttctaagctct-------aagcttatagttctatctatattataatccgtac 12309416  T
Q  231 tcatactcgtcaaatataggtcatacttacccccacacatttagctattgtgatggaatatgcttctggaggagagctatttgagcgaatatgcaatgca 330  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12309417 tcatactcgtcaaatataggtaatacttacccctacacatttagctattgtgatggaatatgcttccggaggagagctatttgagcgaatatgcaatgca 12309516  T
Q  331 ggacggttcagcgaggatga 350  Q
    ||||||||||||||||||||    
T  12309517 ggacggttcagcgaggatga 12309536  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 34077494 - 34077584
Alignment:
Q  66 tattttttaacagatagatgaaaatgtacgaagggaaattataaatcatagatcactgaggcatcccaatattgtcaggttcaaagaggtt 156  Q
    ||||| || |||||| |||||||||||||  || ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||    
T  34077494 tatttctttacagattgatgaaaatgtacagagagaaattataaaccatagatcattgaggcatcccaatattgtcaggttcaaggaggtt 34077584  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 34077716 - 34077783
Alignment:
Q  283 atggaatatgcttctggaggagagctatttgagcgaatatgcaatgcaggacggttcagcgaggatga 350  Q
    |||||||||||||| || ||||||||||||||||||||||||||||| || || ||||| ||||||||    
T  34077716 atggaatatgcttccgggggagagctatttgagcgaatatgcaatgcggggcgattcagtgaggatga 34077783  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 27107794 - 27107714
Alignment:
Q  76 cagatagatgaaaatgtacgaagggaaattataaatcatagatcactgaggcatcccaatattgtcaggttcaaagaggtt 156  Q
    ||||| ||||| ||||| | ||||||||| || || ||||||||| ||| |||||| |||||||| |||||||||||||||    
T  27107794 cagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggtt 27107714  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 350
Target Start/End: Complemental strand, 44633090 - 44633005
Alignment:
Q  265 acacatttagctattgtgatggaatatgcttctggaggagagctatttgagcgaatatgcaatgcaggacggttcagcgaggatga 350  Q
    ||||||||||| ||||||||||| |||||  |||||||||| || |||||| | ||||||||||| ||  ||||||| || |||||    
T  44633090 acacatttagcaattgtgatggagtatgcagctggaggagaactctttgagaggatatgcaatgctggcaggttcagtgaagatga 44633005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 37601884 - 37601943
Alignment:
Q  96 aagggaaattataaatcatagatcactgaggcatcccaatattgtcaggttcaaagaggt 155  Q
    |||||| |||||||||||||| ||| ||| ||||||||||||||| || || ||||||||    
T  37601884 aagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggt 37601943  T

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