View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11338_high_8 (Length: 373)
Name: NF11338_high_8
Description: NF11338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11338_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 84 - 344
Target Start/End: Original strand, 10239281 - 10239542
Alignment:
| Q |
84 |
acctgtgtcggagtcaattt-aggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgta |
182 |
Q |
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| T |
10239281 |
acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgta |
10239380 |
T |
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| Q |
183 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat |
282 |
Q |
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| T |
10239381 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat |
10239480 |
T |
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| Q |
283 |
tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc |
344 |
Q |
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| T |
10239481 |
tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc |
10239542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 101 - 344
Target Start/End: Original strand, 10230519 - 10230762
Alignment:
| Q |
101 |
tttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaactttgatttcataagga |
200 |
Q |
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| T |
10230519 |
tttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagtttgacttcataagga |
10230618 |
T |
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| Q |
201 |
agatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaaca |
300 |
Q |
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| T |
10230619 |
agatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttatactgaccggttaaca |
10230718 |
T |
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| Q |
301 |
cacgtgctacagccacggatccacgtgccgctaaaccaataagc |
344 |
Q |
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| T |
10230719 |
cccgtgctacaaccacggatccacgtgccgctaaagcaataagc |
10230762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 275
Target Start/End: Complemental strand, 10255324 - 10255132
Alignment:
| Q |
84 |
acctgtgtcggagtcaattta-ggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgta |
182 |
Q |
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| T |
10255324 |
acctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgta |
10255225 |
T |
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| Q |
183 |
actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgtta |
275 |
Q |
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| T |
10255224 |
agattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgtta |
10255132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3855632 - 3855697
Alignment:
| Q |
1 |
gataggaggctgtctgtcaaagataaaggacttcgtcattgatatataaagattataggcgtcttg |
66 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
3855697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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