View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11338_high_9 (Length: 344)
Name: NF11338_high_9
Description: NF11338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11338_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 340
Target Start/End: Complemental strand, 54688633 - 54688296
Alignment:
| Q |
3 |
tcgagtgagatgaaaaattggttcagcttccactaacacaagatgcacttctgcatgagcaccaagaaaatggggtaaataaccttttggattgttcctt |
102 |
Q |
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| T |
54688633 |
tcgagtgtgttgaaaaattggttcagcttccactaacacaagatgcacttctacatgagcatcaagaaaatggggtaaataaccttttggatggttcctt |
54688534 |
T |
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| Q |
103 |
aaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaagaagcaaaagaaga |
202 |
Q |
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| T |
54688533 |
aaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaagaagcaaaagaaga |
54688434 |
T |
|
| Q |
203 |
ggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtgagaaagtcaatctccaaaaccttggtaaatttgaagg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688433 |
ggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtgagaaagtcaatctccaaaaccttggtaaatttgaagg |
54688334 |
T |
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| Q |
303 |
gaaatgccaaaaatagcaacatcttatctacaaacaaa |
340 |
Q |
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| T |
54688333 |
gaaatgccaaaaatagcaacatcttatctacaaacaaa |
54688296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 54700556 - 54700242
Alignment:
| Q |
13 |
tgaaaaattggttcagcttccactaacacaagatgcacttctgcatgagcaccaagaaaatggggtaaataaccttttggattgttccttaaggctatta |
112 |
Q |
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|||||||||| ||||||||||||| || |||||||||||||| |||||||| ||||||||| ||||||||||||| |||||| | ||||||||||||||| |
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| T |
54700556 |
tgaaaaattgattcagcttccactcactcaagatgcacttctccatgagcatcaagaaaattgggtaaataacctcttggatggatccttaaggctatta |
54700457 |
T |
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| Q |
113 |
gatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaagaagcaaaagaagaggaagcggtg |
212 |
Q |
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| T |
54700456 |
gatgtgtgtagcgcagccaaagatgctttactgcatacaaaagaatgtacaagggaacttcaatccatcataagaagaag----------gg--gagatg |
54700369 |
T |
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| Q |
213 |
aagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtgagaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaa |
312 |
Q |
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| | || |||||| |||| | |||||| ||| ||| ||| || |||||||||| |||| | ||||||||| |||||| |||||||||||||||| |||| |
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| T |
54700368 |
gattggagctcactgcagaggctaagaaattcatgacatcaagaaaggtagtgaaaaaggccatctccaaagccttggcaaatttgaagggaaataccaa |
54700269 |
T |
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| Q |
313 |
aaatagcaacatcttatctacaaacaa |
339 |
Q |
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| T |
54700268 |
acatagcaacatcttatctacaaacaa |
54700242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 54693156 - 54693016
Alignment:
| Q |
56 |
catgagcaccaagaaaatggggtaaataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaa----agatgctttaattcacaca |
151 |
Q |
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|||||||| ||||| || |||||||| || | || ||| | ||| |||| || ||||||||||| ||||||||||| |||||||||| |||||||| |
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| T |
54693156 |
catgagcatcaagagaaatgggtaaatgacttgtttgatggatccctaagactcttagatgtgtgcagtgcagctaattaaagatgctttacttcacaca |
54693057 |
T |
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| Q |
152 |
aaagaatgcacaagggaacttcaatccctcataagaagaag |
192 |
Q |
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| T |
54693056 |
aaagaatgcacaagggaacttcagtccatcataagaagaag |
54693016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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