View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11339_high_2 (Length: 493)
Name: NF11339_high_2
Description: NF11339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11339_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 52925089 - 52924742
Alignment:
| Q |
19 |
gtctaaacttactcaaatcatgaattggatgaaataaacattactaagaagttgagagtaacagaaactaggtacctagtagtatcaactttttcatcag |
118 |
Q |
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| T |
52925089 |
gtctaaacttactcaaatcatgaattggatgaaataaacattactaagaagttgagagtaacagaaactaggtacctggtagtatcaattttttcatcag |
52924990 |
T |
|
| Q |
119 |
attccacagcagtagcttcaaactcatcaatacctccagtataacttatgataggttcaccttcaacagttactatataaatctcaccttttacagaaac |
218 |
Q |
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| T |
52924989 |
attccacagcagtagcttcaaattcatcaatacctccagtataacttatgataggttcaccttcaacagttactatataaatctcaccttttacagaaac |
52924890 |
T |
|
| Q |
219 |
cacaagagctagtacaacaatcaacagaacacacccaaactccaaaaatctcatcttcaccaattaattggcaactccagtagcttccaagatctgttcc |
318 |
Q |
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| T |
52924889 |
cacaagagctagtacaacaatcaacagaacacacccaaactccaaaaatctcatcttcaccaattaattggcaactccagtagcttccaagatctgttcc |
52924790 |
T |
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| Q |
319 |
aatgtccaatccaatcaaaccataagttagttggttcacttcaatatt |
366 |
Q |
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| T |
52924789 |
aatgtccaatccaatcaaaccataagttagttggttcacttcaatatt |
52924742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 52924696 - 52924637
Alignment:
| Q |
423 |
cagcttaaagttacaaactttaccaattttcactcactctgatctaagtagcaagttctt |
482 |
Q |
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| T |
52924696 |
cagcttaaagttacaaactttaccaatattcactcactctgatctaagtagcaagttctt |
52924637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 16397583 - 16397670
Alignment:
| Q |
112 |
tcatcagattccacagcagtagcttcaaactcatcaatacctccagtataacttatgataggttcaccttcaacagttactatataaa |
199 |
Q |
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|||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
16397583 |
tcatcagattccacagcagtggcttcaaatccatcaataccgccagtgtaacttatgataggctcaccttcaacagttactatgtaaa |
16397670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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