View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11339_high_3 (Length: 325)
Name: NF11339_high_3
Description: NF11339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11339_high_3 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 31414372 - 31414673
Alignment:
| Q |
24 |
taagggttttgttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31414372 |
taagggttttgttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatat |
31414471 |
T |
|
| Q |
124 |
atagattaaataatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataaagttagta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31414472 |
atagattaaataatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataaagttagta |
31414571 |
T |
|
| Q |
224 |
tagcaccatatccacaagtctcattgcttccacaaacggtagactttagatccaaaataccactactctttcctccaaaacatggcttcaaccaccaaag |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31414572 |
tagcaccatatccacaagtctcattgcttccacaaacggtagactttagatccaaaataccactactctttcctccaaaacatggcttcaaccaccaaag |
31414671 |
T |
|
| Q |
324 |
ac |
325 |
Q |
| |
|
|| |
|
|
| T |
31414672 |
ac |
31414673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 35 - 261
Target Start/End: Original strand, 31410413 - 31410642
Alignment:
| Q |
35 |
ttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatatatagattaaat |
134 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||| ||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31410413 |
ttattcatttgttgaacaacaaaaagtgatgaccgttggcacaactaattagttcaggaagtttcacagaaatgaccttaagggaatatatagattaaat |
31410512 |
T |
|
| Q |
135 |
aatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataa----agttagtatagcacc |
230 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||| |||| |||| | |
|
|
| T |
31410513 |
aatgaaataacacacgctgtttcaatgttcatttttgaataaacaatttcataaacaagagttgttgctatatatatataagtgtagtgagtagagca-c |
31410611 |
T |
|
| Q |
231 |
atatccacaagtctcattgcttccacaaacg |
261 |
Q |
| |
|
|||| | ||||||||| |||||||||||||| |
|
|
| T |
31410612 |
atattcccaagtctcagtgcttccacaaacg |
31410642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University