View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11339_low_2 (Length: 752)

Name: NF11339_low_2
Description: NF11339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11339_low_2
NF11339_low_2
[»] chr1 (18 HSPs)
chr1 (9-735)||(13065350-13066086)
chr1 (28-255)||(30368264-30368491)
chr1 (28-253)||(13100812-13101036)
chr1 (34-259)||(13244683-13244908)
chr1 (28-255)||(13070332-13070559)
chr1 (28-127)||(13204396-13204495)
chr1 (34-255)||(13094208-13094429)
chr1 (28-127)||(13007137-13007236)
chr1 (28-197)||(13271453-13271622)
chr1 (28-161)||(19279324-19279457)
chr1 (40-259)||(13085912-13086131)
chr1 (10-127)||(12964013-12964130)
chr1 (34-255)||(13129637-13129858)
chr1 (34-255)||(13161330-13161551)
chr1 (9-104)||(13081002-13081097)
chr1 (211-255)||(13007009-13007053)
chr1 (211-257)||(14707850-14707896)
chr1 (211-256)||(12964214-12964259)
[»] chr8 (1 HSPs)
chr8 (40-127)||(36668062-36668149)
[»] chr7 (2 HSPs)
chr7 (40-127)||(12175735-12175822)
chr7 (49-127)||(12164210-12164288)
[»] chr4 (1 HSPs)
chr4 (40-98)||(3321715-3321773)


Alignment Details
Target: chr1 (Bit Score: 661; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 9 - 735
Target Start/End: Original strand, 13065350 - 13066086
Alignment:
Q  9 gagatggacatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcacc 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13065350 gagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcacc 13065449  T
Q  109 ttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13065450 ttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcg 13065549  T
Q  209 gaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatatatgttgtgtttcctttagcctatttctgattagttgtcgtcgttaaatat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  13065550 gaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatatatgttgtgtttcctttagcctatttctgattagttgtcatcattaaatat 13065649  T
Q  309 tgttatatatggtccaattaacacaccctgattattttgaattgttaatgtttttattatgtttttgtgacctataactatattatgaggtgccaattat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13065650 tgttatatatggtccaattaacacaccctgattattttgaattgttaatgtttttattatgtttttgtgacctataactatattatgaggtgccaattat 13065749  T
Q  409 aagcatcagtttcatgtgttgattataatctaattaattgtgttagcaaaaaggatgcttctccccaatatctgcaaagttcattaactgtcatgtattc 508  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13065750 aagcatcactttcatgtgttgattataatctaattaattgtgttagcaaaaaggatgcttctccccaatatctacaaagttcattaactgtcatgtattc 13065849  T
Q  509 actaggcttcatgactattgttatgtaaataatgga----atgtctatgtaaaagtttttcaacattggtagtgaatagaatttgaagtctgctaaaaac 604  Q
    ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13065850 actaggcttcatgactattgttatgtaaataatggaatgcatgtctatgtaaaagtttttcaacattggtagtgaatagaatttgaagtctgctaaaaat 13065949  T
Q  605 ttatttagatac------atttatatataaaacatcttagactcgcagacatttgaatgttattgtggtattatcaattttcatcatttatagaacccaa 698  Q
    ||||||||||||      |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13065950 ttatttagatacatttatatttatatattaaacatgttagactcgcagaaatttgaatgttattgtggtattatcaattttcatcatttatagaacccaa 13066049  T
Q  699 aggttagccaaatcttcacttttgataatcttgattc 735  Q
    |||||||||||||||||||||||||||||||||||||    
T  13066050 aggttagccaaatcttcacttttgataatcttgattc 13066086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 28 - 255
Target Start/End: Original strand, 30368264 - 30368491
Alignment:
Q  28 ggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| |||| || ||||||||| ||||||||||| | |  |||||| ||||||||||||    
T  30368264 ggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatgg 30368363  T
Q  128 ctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaa 227  Q
     ||| || ||  |  |||||||||||  ||||||  | ||||| ||||| |||||||| || |||  |||| ||  |||  |||||||||||||||||||    
T  30368364 ttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctagggcttctgttgtcctttgaatgaaacatggcttgaa 30368463  T
Q  228 ggtcatagtcactaaaagatgcatttga 255  Q
     ||||  || ||||||||||||||||||    
T  30368464 cgtcaaggttactaaaagatgcatttga 30368491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 13101036 - 13100812
Alignment:
Q  28 ggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| |||| || ||||||||| ||||||| ||||| | |||| || ||||||||||||    
T  13101036 ggacacattatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatgg 13100938  T
Q  128 ctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaa 227  Q
      || || ||| |  ||  |||||||  ||||||  | ||||| ||||| ||| |||| || | ||||||| ||   ||    |||||||||||||||||    
T  13100937 tcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaa 13100838  T
Q  228 ggtcatagtcactaaaagatgcattt 253  Q
    ||||| ||||||||||||||||||||    
T  13100837 ggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 259
Target Start/End: Original strand, 13244683 - 13244908
Alignment:
Q  34 attatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccg 133  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| | || |||||| | | ||||||| ||||||| |||| ||| |    
T  13244683 attataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 13244782  T
Q  134 cggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcat 233  Q
    |  || |  ||||||||||| |||||||  | ||||| ||||| |||||||| |  ||   |||||||  | |  | |||||||| ||||| ||||||      
T  13244783 cttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcga 13244882  T
Q  234 agtcactaaaagatgcatttgatata 259  Q
    ||||| ||||||||||||||||||||    
T  13244883 agtcagtaaaagatgcatttgatata 13244908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 255
Target Start/End: Original strand, 13070332 - 13070559
Alignment:
Q  28 ggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    ||||| ||||||||||| || |||||||||||||||||||||||| |||| || ||||||||||||||||||||| | |  ||| || ||||||||||||    
T  13070332 ggacacattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatgg 13070431  T
Q  128 ctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaa 227  Q
      || || ||| |  ||  |||||||  ||||||  | ||||| ||||| |||||||| |||| ||||||  ||   ||    |||||||||||||| ||    
T  13070432 tcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaagctttcatttgttcttcacatgaaacatggcttcaa 13070531  T
Q  228 ggtcatagtcactaaaagatgcatttga 255  Q
    ||| | ||||||||||||||||||||||    
T  13070532 ggttaaagtcactaaaagatgcatttga 13070559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 13204495 - 13204396
Alignment:
Q  28 ggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||| | |  ||| || ||||||||||||    
T  13204495 ggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatgg 13204396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 255
Target Start/End: Complemental strand, 13094429 - 13094208
Alignment:
Q  34 attatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccg 133  Q
    |||||||||||||| |||||||||||||||||||||||  |||| || |||| |||| | ||||||||||| |  ||| || ||||||||||||  || |    
T  13094429 attatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcag 13094330  T
Q  134 cggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcat 233  Q
    | ||| |  || ||||||||  ||||||  | ||||| ||||| |||||||| |||||||||||| |    ||  | ||||||||||||||||||||       
T  13094329 ctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctgtgtttcttcgcatgaaacatggcttgaaggttga 13094230  T
Q  234 agtcactaaaagatgcatttga 255  Q
    |||| |||||||| ||||||||    
T  13094229 agtctctaaaagaagcatttga 13094208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 13007236 - 13007137
Alignment:
Q  28 ggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| |||| || ||||||||| |||| || ||||| | |||| || ||||||||||||    
T  13007236 ggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatgg 13007137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 13271622 - 13271453
Alignment:
Q  28 ggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| ||| | || |||||||| | |||  || ||||||| ||||    
T  13271622 ggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatgg 13271523  T
Q  128 ctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttc 197  Q
     ||| ||  || || |||||||||||  ||||||| | ||||| |||||  |||| ||||| ||| ||||    
T  13271522 ttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtcagtctgttactcctagggtttc 13271453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 19279324 - 19279457
Alignment:
Q  28 ggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    |||||||||||||||||||| || |||||||||||||| || |||||||| || ||||| ||| | || |||||||| || ||| || ||||||| ||||    
T  19279324 ggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatgg 19279423  T
Q  128 ctgccgcggctatactatggaagttttgcataca 161  Q
     ||| || ||| || ||||||||||| |||||||    
T  19279424 ttgcagctgctgtattatggaagtttcgcataca 19279457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 40 - 259
Target Start/End: Complemental strand, 13086131 - 13085912
Alignment:
Q  40 catgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggcta 139  Q
    |||||||| |||| |||||||||||| || |||||||| ||  |||||||| | || |||||||| | | | ||| ||||||| |||| ||| || ||||    
T  13086131 catgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgcta 13086032  T
Q  140 tactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcac 239  Q
    |  |||||||||||  ||||||  | ||||| |||||| |||||||||||||  ||||||||   ||| | ||| ||||||| || || |||| ||| |     
T  13086031 tgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttag 13085932  T
Q  240 taaaagatgcatttgatata 259  Q
    ||||||||| ||||||||||    
T  13085931 taaaagatgaatttgatata 13085912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 12964013 - 12964130
Alignment:
Q  10 agatggacatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcacct 109  Q
    ||||||| |||||| || ||| |||||||||| || || ||||| ||||||||||| ||||||||||| || ||||||||| | || |||||||| | ||    
T  12964013 agatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagct 12964112  T
Q  110 tcgttgaaatgaagatgg 127  Q
    | ||| ||||||| ||||    
T  12964113 ttgttcaaatgaaaatgg 12964130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 255
Target Start/End: Complemental strand, 13129858 - 13129637
Alignment:
Q  34 attatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccg 133  Q
    |||||||||||||| |||||||||||| ||||||||||  |||| || |||| |||| | ||||||||| | |  ||| || ||||||||||||  || |    
T  13129858 attatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcag 13129759  T
Q  134 cggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcat 233  Q
    | ||| |  ||  |||||||  ||||||  | ||||| ||||| |||||||| |||||||||||| |    ||  | ||||||||||||||||||||       
T  13129758 ctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctgtgcttcttcgcatgaaacatggcttgaaggttga 13129659  T
Q  234 agtcactaaaagatgcatttga 255  Q
    |||| |||||||| ||||||||    
T  13129658 agtctctaaaagaagcatttga 13129637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 255
Target Start/End: Complemental strand, 13161551 - 13161330
Alignment:
Q  34 attatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccg 133  Q
    |||||||||||||| ||||||||||||||| |||||||  |||| || |||| |||| | ||||||||| | |  ||| || ||||||||||||  || |    
T  13161551 attatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcag 13161452  T
Q  134 cggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcat 233  Q
    | ||| |  || ||||||||  ||||||  | ||||| ||||| | |||||| |||||||||||| |    ||  | ||||||||||||||||||||       
T  13161451 ctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaaccccaaggctttctgtgtttcttcgcatgaaacatggcttgaaggttga 13161352  T
Q  234 agtcactaaaagatgcatttga 255  Q
    |||| |||||||| ||||||||    
T  13161351 agtctctaaaagaagcatttga 13161330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 13081002 - 13081097
Alignment:
Q  9 gagatggacatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatat 104  Q
    |||||||| |||| | || |||||||||||||| || |||||||| ||||||||||| || |||||||| |||||||| ||| | || ||||||||    
T  13081002 gagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatat 13081097  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 13007053 - 13007009
Alignment:
Q  211 atgaaacatggcttgaaggtcatagtcactaaaagatgcatttga 255  Q
    |||||||||||||||||||| | ||||||||||||||||||||||    
T  13007053 atgaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 14707896 - 14707850
Alignment:
Q  211 atgaaacatggcttgaaggtcatagtcactaaaagatgcatttgata 257  Q
    |||||||||||||||||||||| |||| | ||||| |||||||||||    
T  14707896 atgaaacatggcttgaaggtcaaagtcgccaaaaggtgcatttgata 14707850  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 12964214 - 12964259
Alignment:
Q  211 atgaaacatggcttgaaggtcatagtcactaaaagatgcatttgat 256  Q
    ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  12964214 atgaaacatggtttgaaggtcaaagtcagtcaaagatgcatttgat 12964259  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 36668149 - 36668062
Alignment:
Q  40 catgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    |||||||| |||||||||||||| ||||||||||| || ||||| ||| |||||||||| ||||| | |||| ||||  |||||||||    
T  36668149 catgtaccttcttacaagttcattgctttcaatgctggaccaaggagtcgtttgggtaaggatataagcttcattgagttgaagatgg 36668062  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 12175822 - 12175735
Alignment:
Q  40 catgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    ||||| || |||||||||||||| ||||||||||| || ||||| |||||||||||||| ||||| | |||| |||| ||||| ||||    
T  12175822 catgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 12175735  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 12164288 - 12164210
Alignment:
Q  49 tcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 127  Q
    |||||||||||||| ||||| ||||| || ||||| |||||||||||||| ||||| | |||| |||| ||||| ||||    
T  12164288 tcttacaagttcattgcttttaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 12164210  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 3321715 - 3321773
Alignment:
Q  40 catgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaa 98  Q
    |||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||||||    
T  3321715 catgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaa 3321773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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