View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11339_low_5 (Length: 448)
Name: NF11339_low_5
Description: NF11339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11339_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 26 - 433
Target Start/End: Original strand, 37430426 - 37430833
Alignment:
| Q |
26 |
gtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaattatactctcttgtttaggattttggatttgattattttagcctatat |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||| ||| |
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| T |
37430426 |
gtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaactatactctcttcttgaggattttttatttgattattttagcctctat |
37430525 |
T |
|
| Q |
126 |
ctatagaggttatgaagaggtttgaaagatgcagaagcatgacctacaaagcattgattgcaaacatatagtagttgataagaagaatgaataagggaaa |
225 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
37430526 |
ctatagatgttatgaagaggtttgaaagatgcagaagcatgacctactaagcattgattgcaaccatatagtagttgataagcagaatgaatcagggaaa |
37430625 |
T |
|
| Q |
226 |
agaatattgcatatatgtcttattctctttgtatttgaaattgtggtagtcttgtcttgtgcattggactattagtgttttcctgtcctggtttgacaaa |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37430626 |
agaatattgcatatatgtcttattctctttgtatttgaaattgtggtagtcttgtcttgtgcattggactattagtgttttcctgtcctggtttgacaaa |
37430725 |
T |
|
| Q |
326 |
tcttttctggtgttctggtttgacaaatcttaatgctttacctatacagtgtttaattcgttaatagaacaattcctatgatcacaatttccaaattaat |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37430726 |
tcttttctggtgttctggtttgacaaatcttaatgctttacctatacagtgtttaattcgttaatagaataattcctatgatcacaatttccaaattaat |
37430825 |
T |
|
| Q |
426 |
cttgtttc |
433 |
Q |
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|||||||| |
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| T |
37430826 |
cttgtttc |
37430833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 37698462 - 37698509
Alignment:
| Q |
26 |
gtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag |
73 |
Q |
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||||||||||| |||||| ||||||| | ||||||||||||||||||| |
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| T |
37698462 |
gtgaaaggcaaaataaggcaatagaataaaaaaggaccccatttagag |
37698509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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