View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11339_low_8 (Length: 242)
Name: NF11339_low_8
Description: NF11339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11339_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48536053 - 48535830
Alignment:
| Q |
1 |
tgtttattggatttcaagttcattcatttctattttagtttatctcgttatgcatgcttttgatatttttctcaattcgtttattggagaaatccatcta |
100 |
Q |
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| T |
48536053 |
tgtttattggatttcaagttcattcatttctattttagtttatctcgttatgcatgcttttgatatttttctcaattcgtttattggagaaatccatcta |
48535954 |
T |
|
| Q |
101 |
ttacgatccatgcaaatgcaattcacggggcttgggcatcgactcaataaaacttgtttttggtggttgttcttccattccaattacttttcactaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48535953 |
ttacgatccatgcaaatgcaattcacggggcttgggcatcgactcaataaaacttgtttttggtggttgttcttccattccaattacttttcactaatca |
48535854 |
T |
|
| Q |
201 |
attatatatgaatgtatgattctt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
48535853 |
attatatatgaatgtatgattctt |
48535830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 48533100 - 48532987
Alignment:
| Q |
114 |
aaatgcaattcacggggcttgggcatcgactcaataaaac--ttgtttttggtggttgttcttccattccaattacttttcac-taatcaattatatatg |
210 |
Q |
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|||||||||||||||||||| |||||| ||||||| |||| |||||| |||| |||||||||| ||||||||||||||| || |||||||||||| ||| |
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| T |
48533100 |
aaatgcaattcacggggctttggcatcaactcaatcaaacttttgtttctggtcgttgttcttctattccaattacttttaacttaatcaattatacatg |
48533001 |
T |
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| Q |
211 |
aatgtatgattctt |
224 |
Q |
| |
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|||||||| ||||| |
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| T |
48533000 |
aatgtatgtttctt |
48532987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 39880291 - 39880331
Alignment:
| Q |
170 |
ttcttccattccaattacttttcactaatcaattatatatg |
210 |
Q |
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|||||||||||| ||||||||| |||||| ||||||||||| |
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| T |
39880291 |
ttcttccattcctattacttttaactaattaattatatatg |
39880331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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