View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_high_10 (Length: 475)
Name: NF1133_high_10
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 100 - 464
Target Start/End: Original strand, 13234195 - 13234559
Alignment:
| Q |
100 |
agaacccccgagctttttctatcaagactaatggtcctcaccttcatgggagttatgatggcaacaatgttccacaatccaaaaaataccttacaaggaa |
199 |
Q |
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| T |
13234195 |
agaacccccgagctttttctatcaagactaatggtcctcaccttcatgggagttatgatggcaacaatgttccacaatccaaaaaataccttacaaggaa |
13234294 |
T |
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| Q |
200 |
tcacaaatcgtctcagtttcttcattttcacagtgtgtctgtttttcttctcttcaaatgatgcggtccctgccttcatccaagagaggttcatcttcat |
299 |
Q |
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| T |
13234295 |
tcacaaatcgtctcagtttcttcattttcacagtgtgtctgtttttcttctcttcaaatgatgccgtccctgccttcatccaagagaggttcatcttcat |
13234394 |
T |
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| Q |
300 |
ccgcgaaacttctcataatgcctatagagcttcttgttacaccatagctagcctaatcactcacatgccgtttcttgcgctccaagctttagcctatgct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13234395 |
ccgcgaaacttctcataatgcctatagagcttcttgttacaccatagctagcctaatcactcacatgccgtttcttgcgctccaagctttagcctatgct |
13234494 |
T |
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| Q |
400 |
gccattgtttggtttgctttagaacttagaggcccatttatatacttcttccttgttctcttcat |
464 |
Q |
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| T |
13234495 |
gccattgtttggtttgctttagaacttagaggcccatttatatacttcttccttgttctcttcat |
13234559 |
T |
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