View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_high_11 (Length: 473)
Name: NF1133_high_11
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 9e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 20140142 - 20140017
Alignment:
| Q |
139 |
catgtcactaatacatttagaccttttggtaaaatttgatgggtaacatatttttaaatgttactaacataagtttaaggtaacgtttctttttgttata |
238 |
Q |
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| T |
20140142 |
catgtcactaatacatttagaccttttggtaaaatttgatgggtaacatatttttaaatgttactaacataagtttaaggtaacgtttctttttgttata |
20140043 |
T |
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| Q |
239 |
aattgttgcaagaatattagttttta |
264 |
Q |
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| T |
20140042 |
aattgttgcaagaatattagttttta |
20140017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 312 - 464
Target Start/End: Complemental strand, 20139874 - 20139722
Alignment:
| Q |
312 |
catctcgttcgaaattattcttaatcgatggtaggtaaaagnnnnnnngtaagcaacatccccaaattaaggaaagccaaaatacaaacaaacggtatca |
411 |
Q |
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| T |
20139874 |
catctcgttcgaaattattcttaatcgatggtaggtaaaagaaaaaaagtaagcaacatccccaaattaaggaaagccaaaatacaaacaaacggtatca |
20139775 |
T |
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| Q |
412 |
atctccacagtcgacaaatttgtaagttcagtcacccaaaataccattcatct |
464 |
Q |
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| T |
20139774 |
atcttcacagtcaacaaatttgtaagttcagtcacccaaaataccattcatct |
20139722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 20140352 - 20140238
Alignment:
| Q |
5 |
tcattgatgcctttcttggagaatttagtagaagttgatgatgtccgaaccgaaattaaaaacaggttcaacctccagaagnnnnnnnttgctgatgctt |
104 |
Q |
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| T |
20140352 |
tcattgattcctttcttggagagtttagtagaagttgatgatgtccgaaccgaaattaaaaacaggttcaacctccagga---aaaaattgctgatgctt |
20140256 |
T |
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| Q |
105 |
attaggtgcaatggattt |
122 |
Q |
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| T |
20140255 |
attaggtgcaatggattt |
20140238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 15835762 - 15835685
Alignment:
| Q |
139 |
catgtcactaatacatttagaccttttggtaaaatttgatgggtaacatatttttaaatgttactaacataagtttaa |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||| |
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| T |
15835762 |
catgtcactaatacacttagaccttttggtaaaatttgatgggcaacatattttaaaatgttgctaacctaagtttaa |
15835685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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