View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_high_12 (Length: 468)
Name: NF1133_high_12
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_12 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 122 - 383
Target Start/End: Complemental strand, 9334585 - 9334321
Alignment:
| Q |
122 |
tatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacacc |
221 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9334585 |
tatgatttattaagatttggatattctcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacacc |
9334486 |
T |
|
| Q |
222 |
attgggtttacgcacaaaacttggcgatatggaaatttaatctcttattattatatcctgacagcatgacggtgaaactggcaaaagtgttatatttcca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9334485 |
attgggtttacgcacaaaacttggcgatatggaaatttaatctcttattattatatcctgacagcatgacggtgaaactggcaaaattgttatatttcca |
9334386 |
T |
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| Q |
322 |
agaagacttgtattttgtttcaattctcagtatac---tactcatgtttgatatattgaaaatag |
383 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9334385 |
agaagacttgtattttgtttcaattctcagtatactactactcatgtttgatatattgaaaatag |
9334321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 9329174 - 9329118
Alignment:
| Q |
136 |
atttggatcttctcatttagttcttaacagaaacttttgtcactttatacaggggcg |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9329174 |
atttggatcttctcatttagttcttaacagaaacttttgccactttatacaggggcg |
9329118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 9329068 - 9328989
Alignment:
| Q |
292 |
ggtgaaactggcaaaagtgttatatttccaagaagacttgt-attttgtttcaattctcagtatactactcatgtttgatat |
372 |
Q |
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||||||| |||||||||| |||| ||||||| ||||||||| |||||||||||||||| | |||||||||||||||||||| |
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| T |
9329068 |
ggtgaaattggcaaaagttttatttttccaacaagacttgttattttgtttcaattctga--atactactcatgtttgatat |
9328989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 9580227 - 9580306
Alignment:
| Q |
148 |
tcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacaccattggg |
227 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||| |||| | ||||||||| || |||||||| ||||||| |
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| T |
9580227 |
tcatatagtttttaacagaaacttttgtcactttatacaggagcgacgaaaagaaagaggacgtgagacacgacattggg |
9580306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 9334620 - 9334584
Alignment:
| Q |
44 |
tattacttggtatgtaattctcactattagatatata |
80 |
Q |
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| T |
9334620 |
tattacttggtgtgtaattctcactattagatatata |
9334584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 451271 - 451398
Alignment:
| Q |
78 |
atagaaaatgaatttatcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtca |
177 |
Q |
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||||||||| ||||||||| ||||||||||||||||||| || || |||||||| |||||| ||||||||||||||||| | ||| || ||||||| |
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| T |
451271 |
atagaaaatcaatttatcaatttacttttataaattttccatgacattatttattaggatttgaatcttctcatttagttcctgacacaattttttgtct |
451370 |
T |
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| Q |
178 |
ctttatacaggggcgagggaaagaaaga |
205 |
Q |
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||||||| ||| | || |||||||||| |
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| T |
451371 |
ctttatataggacctagagaaagaaaga |
451398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 3680059 - 3680104
Alignment:
| Q |
123 |
atgatttattaagatttggatcttctcatttagttcttaacagaaa |
168 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
3680059 |
atgatttactaagatttggatcttctcatttagttcctaacagaaa |
3680104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 15458 - 15383
Alignment:
| Q |
93 |
atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa |
168 |
Q |
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|||| |||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15458 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa |
15383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 16101 - 16026
Alignment:
| Q |
93 |
atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa |
168 |
Q |
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|||| |||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16101 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa |
16026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 14493984 - 14494059
Alignment:
| Q |
93 |
atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa |
168 |
Q |
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|||| |||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14493984 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa |
14494059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 4432755 - 4432648
Alignment:
| Q |
82 |
aaaatgaatttatcattttacttttataaatttt-ctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtcactt |
180 |
Q |
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||||| ||||||||| ||||| ||||||||||| ||| | ||| |||||||| |||||||||||||||||||||||| ||||| || ||||| |||| |
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| T |
4432755 |
aaaatcaatttatcaatttacggttataaattttgctc-gatattatttattaggatttggatcttctcatttagttcctaacaaaatgctttgttactt |
4432657 |
T |
|
| Q |
181 |
tatacaggg |
189 |
Q |
| |
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| ||||||| |
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| T |
4432656 |
tttacaggg |
4432648 |
T |
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