View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_high_15 (Length: 446)
Name: NF1133_high_15
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 38629567 - 38629188
Alignment:
| Q |
12 |
agctgttgcacgatgtttcagcggtaggggatccaaatccgtaaccaaggtttttt-aactttgcaggttttgagctcagaaattgcagagcctaaaaag |
110 |
Q |
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| T |
38629567 |
agctgttgcacgatgtttcagcggtaggggatccaaatccgtaaccaaggtttttttaactttgcaggttttgagctcagaaattgcagagcctaaaaag |
38629468 |
T |
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| Q |
111 |
aagttaaagcacatagttatggcagctactaggtgcgtgtttctattattatatgggagtcaaagaacttatcaggaatgaaacatgtcaccttcctata |
210 |
Q |
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| T |
38629467 |
aagttaaagcacatagttatggcagctactaggtgtgtgtttctattattatatgggagtcaaagaacttatcaggaattaaacatgtcaccttcctata |
38629368 |
T |
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| Q |
211 |
cctcctcttagattgttttgttttattgcttttaccttctcttaggttctttaccaaatttcttgttagattcagagaaacaaatgatttatcttttttc |
310 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38629367 |
cctcctcttagattattttgttttattgcttttaccttctcttaggttctttaccaaatttcttgttagattcagagaaacaaatgatttatcttttttc |
38629268 |
T |
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| Q |
311 |
cataaaagaaaggtccaaaccttctaaaatacatttatgaaagtaagcttgatgaaactctaaaaagaaaatccataaaa |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38629267 |
cataaaagaaaggtccaaaccttctaaaatacatttatgaaagtaagcttgatgaaactctaaaaagaaaatccataaaa |
38629188 |
T |
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