View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_high_21 (Length: 360)
Name: NF1133_high_21
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 34662093 - 34662345
Alignment:
| Q |
10 |
ataattctcgatagacctcatagataagagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatccggcttcaaaaacttccttc |
109 |
Q |
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| T |
34662093 |
ataattctcgatagacctcatagataagagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatccggcttcaaaaacttccttc |
34662192 |
T |
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| Q |
110 |
acagatatgtggaagataccatctctcctgatatggatattcaatcatatgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgt |
209 |
Q |
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| T |
34662193 |
acagatatatggaagataccatctctcgtgatatggatattcaatcatatgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgt |
34662292 |
T |
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| Q |
210 |
ttgtcaaactagtatttatgaagaagcttatggagcttttagatatgccatac |
262 |
Q |
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| T |
34662293 |
ttgtcaaactagtatttatgaagaagcttatggagcttttagatatgccatac |
34662345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 26956141 - 26956244
Alignment:
| Q |
159 |
tgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgtttgtcaaactagtatttatgaagaagcttatggagcttttagatatgcc |
258 |
Q |
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| T |
26956141 |
tgctacatcaattaaggaaaacattgtcgatagtggaattctactaattggttgtcaaactagaatttctgaagaagcttatggagtttttagatatgcc |
26956240 |
T |
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| Q |
259 |
atac |
262 |
Q |
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|||| |
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| T |
26956241 |
atac |
26956244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 26881787 - 26881911
Alignment:
| Q |
29 |
atagataagagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatcc---ggcttcaaaaacttccttcacagatatgtggaaga |
125 |
Q |
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| T |
26881787 |
atagatgagagaaaaatatagaaaatgagctaatataagagagcacaaaggaaggatcatcctcatgcttcaaaaacatgcttcacatatatgtggaaga |
26881886 |
T |
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| Q |
126 |
taccatctctcctgatatggatattca |
152 |
Q |
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| T |
26881887 |
tac--actctcgtgatatggatattca |
26881911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 26955529 - 26955592
Alignment:
| Q |
94 |
ttcaaaaacttccttcacagatatgtggaagataccatctctcctgatatggatattcaatcat |
157 |
Q |
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| T |
26955529 |
ttcaaaaacttccttcacagcaatgtgaaagataccgtctttcgtggtatggatattcaatcat |
26955592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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