View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_high_27 (Length: 283)
Name: NF1133_high_27
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_27 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 273
Target Start/End: Complemental strand, 4158 - 3915
Alignment:
| Q |
30 |
tatggggcaaggaaaatggcgttatttggagttggtcaaataggttgcaccccaaatgcattggcccaaaacagcccagatggtagaacatgtgtagcaa |
129 |
Q |
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| T |
4158 |
tatggggcaaggaaaatggcgttatttggagttggtcaaataggttgcaccccaaatgcattggcccaaaacagcccagatggtagaacatgtgtagcaa |
4059 |
T |
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| Q |
130 |
gaatcaattctgcaaatcaattattcaacaatggattaagatctcttgttgatcaactcaataaccaacttcctgatgcaagattcatttatgtaaatgt |
229 |
Q |
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| T |
4058 |
gaatcaattctgcaaatcaattattcaacaatggattaagatctcttgttgatcaactcaataaccaacttcctgatgcaagattcatttatgtaaatgt |
3959 |
T |
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| Q |
230 |
ttatggtatctttcaagacatcataaccagcccatcaacctatg |
273 |
Q |
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| T |
3958 |
ttatggtatctttcaagacatcataaccagcccatcaacctatg |
3915 |
T |
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Back To:
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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 7615681 - 7615917
Alignment:
| Q |
30 |
tatggggcaaggaaaatggcgttatttggagttggtcaaataggttgcaccccaaatgcattggcccaaaacagcccagatggtagaacatgtgtagcaa |
129 |
Q |
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| T |
7615681 |
tatggagcaaggaaaatggctttatttgggattggtcaaataggttgcagtccaaatgaattagctcaaaacagtccagatggtaccacttgtgttgaaa |
7615780 |
T |
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| Q |
130 |
gaatcaattctgcaaatcaattattcaacaatggattaagatctcttgttgatcaactcaataaccaacttcctgatgcaagattcatttatgtaaatgt |
229 |
Q |
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| T |
7615781 |
gaataaattctgcaaaccaattatttaacaacggattgaaatctcttgttaatcaactcaacaatgagcttacggatgcaagattcatctatgtaaatac |
7615880 |
T |
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| Q |
230 |
ttatggtatctttcaagacatcataaccagcccatca |
266 |
Q |
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| T |
7615881 |
ttatggtatttttcaagatatcataaacaacccatca |
7615917 |
T |
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