View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_high_29 (Length: 275)
Name: NF1133_high_29
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 3437537 - 3437768
Alignment:
| Q |
30 |
aaaagtttatgttaattacggttaaataatagttaaaattannnnnnnaaagccaaaatacaagttaatattaattacttggtnnnnnnnnnn--tacta |
127 |
Q |
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| T |
3437537 |
aaaagtttatgttaattacggttaaataatagttaaaattatttttttaaagtcaaaatacaagttaatattaattatttggtaaaaaaaattaatatta |
3437636 |
T |
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| Q |
128 |
atgatagtttacnnnnnnnnnggtacataaaagaaggcaaaacccattgatagttaacttttaacacacaaaataataagtgaagtatactctaaaggtg |
227 |
Q |
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| T |
3437637 |
atgatagtttactttttttttg-tacataaaagaaggcaaaacccattgatagttaacttttaacacacaaaataataagtgaagtatactctaaaggtg |
3437735 |
T |
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| Q |
228 |
gagtatgatagttcttttgattttttgttgaat |
260 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3437736 |
gagtatgatagttcttttgattttttgttgaat |
3437768 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 2141577 - 2141617
Alignment:
| Q |
207 |
gtgaagtatactctaaaggtggagtatgatagttcttttga |
247 |
Q |
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|||||||||||| | | |||||||||||||||||||||||| |
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| T |
2141577 |
gtgaagtatacttttatggtggagtatgatagttcttttga |
2141617 |
T |
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