View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1133_high_5 (Length: 532)
Name: NF1133_high_5
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_5 |
 | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
| [»] scaffold0888 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0149 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 108 - 519
Target Start/End: Original strand, 31159 - 31566
Alignment:
| Q |
108 |
tcttgatgtcttatctggagtattgattcttgattttttaccatccaacgaattcaatcgttgataaagatgagctataaaaatttaaaggttttcacat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31159 |
tcttgatgtcttatctggagtattgattcttgattttttaccatccaacgaattcaatcgttgataaagatgagctataaaaatttaaaggttttcacat |
31258 |
T |
|
| Q |
208 |
cccgccatactatgtttgtctttgttacccccataaaatttcttttggttgttccgtggagatgtttttccattcccttttgtttctaggagttaatcac |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31259 |
cccgccatactatgtttgtctttgtttcccccataaaatttcttttcgttgttccgtggagatgtttttccattcccttttgtttctaggagttaatcac |
31358 |
T |
|
| Q |
308 |
tgtatttatgactaagagaaacctttcctttctcttccctctaatatttttactgcttttgttgctttttggtagagaagttaggttg-nnnnnnngtag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31359 |
tgtatttatgactaagagaaacctttcctttctcttccctcttatatttttactgcttttgttgctttttggtagagaagttaggttgttttttttgtag |
31458 |
T |
|
| Q |
407 |
ttaaactggcccattgataaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaagaa |
506 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31459 |
ttaaa----cccattgataaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaa-ca |
31553 |
T |
|
| Q |
507 |
cgcgcttagtttc |
519 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31554 |
cgcgcttagtttc |
31566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 505
Target Start/End: Original strand, 14888210 - 14888295
Alignment:
| Q |
420 |
ttgataaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaaga |
505 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |||||||||||||||||| ||| | || |||| |||||||||| |||| |||| |
|
|
| T |
14888210 |
ttgataaagaggatcttacctaggctcgtacgttagtaagtattatgtcggctttgtcaaaaatatattgtattgtaccacgaaga |
14888295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0888 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0888
Description:
Target: scaffold0888; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 3183 - 3248
Alignment:
| Q |
194 |
aaaggttttcacatcccgccatactatgtttgtctttgttacccccataaaatttcttttggttgttc |
261 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
3183 |
aaaggttttcacatccctccatacgttgtttgtctttgtt--ccccataaactttcttttcgttgttc |
3248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University