View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_high_8 (Length: 484)
Name: NF1133_high_8
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 18892605 - 18892126
Alignment:
| Q |
1 |
agacccaacttcaaaacagtagttttagaaatagcaagacaaagtccctaataggcttttcattcatgtcaacttcagccctccacctcaaatcctccaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18892605 |
agacccaacttcaaatcagtagttttagaaatagcaagacaaagtccctaataggcttttcattcatgtcaacttcaaccctccacctcaaatcctccaa |
18892506 |
T |
|
| Q |
101 |
atcacatcaaattttctttcctaattgttattaagaaaccatactcatttgtcacatggtctactgtacaacctattcttcataccaatgcaatttctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18892505 |
atcacatcaaattttctttcctaattgttattaagaaaccatactcatttgtcacatggtctactgtacaacctattcttcataccaatgcaatttctat |
18892406 |
T |
|
| Q |
201 |
tgccttttatttagcaaacaaaccaagaaaagtgcatgtattccattaaagacagaaaacaaagaaatcgaaaaatcctaa------gattacatatgcg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
18892405 |
tgccttttatttagcaaacaaaccaagaaaagtgcatgtattccattaaagacagaaaacaaagaaattgaaaaatcctaatgaagggattacatatgcg |
18892306 |
T |
|
| Q |
295 |
cacatgtgtaattgaaagtgggagttggagtataattttcatgaagggattacatgatggcaaaaacccaacaccagtaatctacatatacgtaccacga |
394 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18892305 |
cacatgtgtaattgaaagtgggagttggaatataattttcatgaagggattacatgatggcaaaaacccaacaccagtaatctacatatacgtaccacga |
18892206 |
T |
|
| Q |
395 |
aaagttcaatagaaaagattgaaattgtaatcgatgggcaagttgcatttaaataagaaagtgagaaataaggatattgt |
474 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
18892205 |
aaaattcaatagaaaagattgaaattttaatcgatgggcaagctgcatttaaataagaaagtgagaaataaggatattgt |
18892126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 49264512 - 49264030
Alignment:
| Q |
1 |
agacccaacttcaaaacagtagtt---ttagaaatagcaagacaaagtccctaataggcttttcattcatgtcaacttcagccctccacctcaaatcctc |
97 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49264512 |
agacccaacttcaaaacagtagttaatttagaaatagcaagacaaagtccctaataggcttttcattcatgtcaactttagccctccacctcaaatcctc |
49264413 |
T |
|
| Q |
98 |
caaa-tcacatcaaattttctttcctaattgttattaagaaaccatactcatttgtcacatggtctactgtacaacctattcttcataccaatgcaattt |
196 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49264412 |
aaaaatcacatcaaattttctttcctaattgttattaagaaaccatactcatttgtcacatggtctactgtacaacctattcttcataccaatgcaattt |
49264313 |
T |
|
| Q |
197 |
ctattgccttttatttagcaaacaaaccaagaaaagtgcatgtattccattaaagacagaaaacaaagaaatcgaaaaatcctaa------gattacata |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
49264312 |
ctattgccttttatttagcaaacaaaccaagaaaagtgcatgtattccattaaagacagaaaacaaagaaattgaaaaatcctaatgaagggattacata |
49264213 |
T |
|
| Q |
291 |
tgcgcacatgtgtaattgaaagtgggagttggagtataattttcatgaagggattacatgatggcaaaaacccaacaccagtaatctacatatacgtacc |
390 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49264212 |
tgcgcacaactgtaattgaaagtgggagttggagtataattttcatgaagggattacatgatggcaaaaacccaacaccagtaatctacatatacgtacc |
49264113 |
T |
|
| Q |
391 |
acgaaaagttcaatagaaaagattgaaattgtaatcgatgggcaagttgcatttaaataagaaagtgagaaataaggatattgt |
474 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
49264112 |
acgaaaaattcaatagaaaagattgaaattttaatcgatggg-aagttgcatttaaataagaaaatgagaaacaaggatattgt |
49264030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 474
Target Start/End: Original strand, 35411192 - 35411224
Alignment:
| Q |
442 |
tttaaataagaaagtgagaaataaggatattgt |
474 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
35411192 |
tttaaataagaaagtgaaaaataaggatattgt |
35411224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 474
Target Start/End: Original strand, 1103550 - 1103582
Alignment:
| Q |
442 |
tttaaataagaaagtgagaaataaggatattgt |
474 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
1103550 |
tttaaataagaaagtgagaaataaggaaattgt |
1103582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 28385192 - 28385228
Alignment:
| Q |
442 |
tttaaataagaaagtgagaaataaggatattgttcga |
478 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
28385192 |
tttaaataaaaaagtgagaaataaggatattattcga |
28385228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 474
Target Start/End: Original strand, 48528480 - 48528512
Alignment:
| Q |
442 |
tttaaataagaaagtgagaaataaggatattgt |
474 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
48528480 |
tttaaataagaaagtgagaaataaggaaattgt |
48528512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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